Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M16
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    49   5e-06
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    29   4.4  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    29   4.4  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    29   4.4  
U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    29   5.9  

>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +3

Query: 192 FAFLHVELTRGYLLEHDEERFQQDEKKCXXY-KXPPKXKKFMAYGFFXXADSLVFXSPFL 368
           F+F   ELTRGY L +D  RF +  +K   + + P + ++F+ YG     D+  +   FL
Sbjct: 144 FSFFWEELTRGYSLHNDHARFSEKRRKVYAFLRIPLELEQFLTYGLLQCIDAFFYLFTFL 203

Query: 369 PXKILXA-FXAFL 404
           P + L + F A L
Sbjct: 204 PLRFLMSIFGALL 216


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
 Frame = +3

Query: 63  IYDQPKRLRFKSVTNVQQSSNE---ITSTAIGKDIRCRDEEKSASLFAFLHVELTRGYLL 233
           + D   R+ F+ V+  + SS +   +        +RC  + K        H ++ R  ++
Sbjct: 479 LIDDIARIAFRRVSPEELSSMKYVKLLDEVTDMHLRCSIDNKIMDTDEINHYDVCREMII 538

Query: 234 EHDEERFQQDEKKCXXYKXPPKXKKFMAYGFFXXADSLVFXSPFLPXK 377
            H+    + +EK+C   K   K  K      F   ++     PF P K
Sbjct: 539 RHEWNVSKINEKQCLNSKLSEKRGKVQNAENFVNQNTQNNFKPFSPNK 586


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
 Frame = +3

Query: 63  IYDQPKRLRFKSVTNVQQSSNE---ITSTAIGKDIRCRDEEKSASLFAFLHVELTRGYLL 233
           + D   R+ F+ V+  + SS +   +        +RC  + K        H ++ R  ++
Sbjct: 382 LIDDIARIAFRRVSPEELSSMKYVKLLDEVTDMHLRCSIDNKIMDTDEINHYDVCREMII 441

Query: 234 EHDEERFQQDEKKCXXYKXPPKXKKFMAYGFFXXADSLVFXSPFLPXK 377
            H+    + +EK+C   K   K  K      F   ++     PF P K
Sbjct: 442 RHEWNVSKINEKQCLNSKLSEKRGKVQNAENFVNQNTQNNFKPFSPNK 489


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
 Frame = +3

Query: 63  IYDQPKRLRFKSVTNVQQSSNE---ITSTAIGKDIRCRDEEKSASLFAFLHVELTRGYLL 233
           + D   R+ F+ V+  + SS +   +        +RC  + K        H ++ R  ++
Sbjct: 393 LIDDIARIAFRRVSPEELSSMKYVKLLDEVTDMHLRCSIDNKIMDTDEINHYDVCREMII 452

Query: 234 EHDEERFQQDEKKCXXYKXPPKXKKFMAYGFFXXADSLVFXSPFLPXK 377
            H+    + +EK+C   K   K  K      F   ++     PF P K
Sbjct: 453 RHEWNVSKINEKQCLNSKLSEKRGKVQNAENFVNQNTQNNFKPFSPNK 500


>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = +3

Query: 66  YDQPKRLRFKSVTNVQQSSNEITSTAIGKDIRCRDEEKSASLFAFLHVELTRGYLLEHDE 245
           Y+  KR R KSVT++++   +       K+   ++E+   +  AFL  +  +  LL  + 
Sbjct: 350 YEMWKRERSKSVTDIRKKLEQEEDKKRKKEEEAKNEKIKEAQAAFLAWKRKKEELLNEEA 409

Query: 246 ERFQQDE 266
           E+ ++++
Sbjct: 410 EKLKKEQ 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,183,552
Number of Sequences: 27780
Number of extensions: 142289
Number of successful extensions: 259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)