Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M15
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 104 1e-23
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 29 1.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.5
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 27 4.4
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 4.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 4.4
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 5.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.8
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 104 bits (250), Expect = 1e-23
Identities = 65/202 (32%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Frame = +2
Query: 95 PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK- 268
PE E+ I+ V+ + L VM I+KHC + S NM G L+G+ ++ L++++ F P
Sbjct: 10 PELESPPIERVELESLLVMNIIKHCRD-SFPNMGTI-GQLVGIDIDGVLQVSSSFESPSV 67
Query: 269 ---HDDTMDE-------EEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSL-LESQY 415
+ +++ + + M+ RL+ + HVGWY A V +FLS +E+QY
Sbjct: 68 LENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQY 127
Query: 416 HYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLF 595
YQ + S+ +YD +S+ G L ++AY+LTP+ +A ++E +T +L + + N+
Sbjct: 128 AYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVI 187
Query: 596 IEVPIVIRNSPLTNIMISELTE 661
E+PIVI NS L ++ L+E
Sbjct: 188 RELPIVIHNSHLATCLLHSLSE 209
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 221 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFL 388
+ +NRLE N F FP D + EY M R+L +NV VG +S + ++
Sbjct: 7 IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV----VGMTKSVLMSSYF 62
Query: 389 SLSLL 403
+L L+
Sbjct: 63 NLMLV 67
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 310 HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 221
+++ VFL IH ++ W+WE V + ++ D
Sbjct: 969 YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 224 RPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSS 108
R N +LP PP ++ +++ LF+S+ H+ + S
Sbjct: 768 RSNSAKLPYVPPSLTSLIDNAIQLFASMFCHQPPKVMES 806
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = -3
Query: 796 SCXTYXLDRXLIQFINTFHETAKLSFXNRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W 626
+C ++R L+ F+ F T K + C T + L F + + L L+D W
Sbjct: 280 NCSFDEIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRW 339
Query: 625 -RVPDNNWH 602
RV + +W+
Sbjct: 340 CRVKEYSWN 348
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 188 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 337
M+ + L GLV + +T + P H + + +++LD R RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 431 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 583
+ + +VV YD K + F L+A TP+ E TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 518 AIAMYKEGDYTPEALRNLKIGYENLFIEVPIVI 616
AIA+ ++G +T RN KI + ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 248 W*SPDGSQRPNQGELPEPPP 189
W + DGS NQ P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,844
Number of Sequences: 5004
Number of extensions: 70067
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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