Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M14
(879 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 50 4e-08
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 27 0.30
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 6.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 49.6 bits (113), Expect = 4e-08
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +1
Query: 457 LDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLLTQ 636
L+LS N L+ + + F GL L R+ L I I AF+ ++L ELDLS N LT
Sbjct: 388 LELSDNKLRTVGAQLF--NGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTS 445
Query: 637 IPSNSFKDAPFLRDLTLAQNPIXKF 711
+P ++ +D L+ L L +N I F
Sbjct: 446 VP-DALRDLALLKTLDLGENRISNF 469
Score = 46.4 bits (105), Expect = 3e-07
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +1
Query: 412 ALITVPEPVDPATQVL---DLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAF 582
+L ++PE + +T+ L L+ N L+ LP+ F R + + + ++ + F
Sbjct: 272 SLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTF 331
Query: 583 KGLTNLVELDLSQNLLTQIPSNSFKDAPFLRDLTLAQNPIXK 708
GL L+ L+LS N+LT I + FKD FL+ L L N I +
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDR 373
Score = 35.9 bits (79), Expect = 5e-04
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = +1
Query: 454 VLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLLT 633
VL+L+GN L + GL+ L + L + I R FK L L LDL N +
Sbjct: 313 VLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSID 372
Query: 634 QIPSNSFKDAPFLRDLTLAQNPI 702
+I SN+F L L L+ N +
Sbjct: 373 RIESNAFLPLYNLHTLELSDNKL 395
Score = 35.9 bits (79), Expect = 5e-04
Identities = 26/87 (29%), Positives = 45/87 (51%)
Frame = +1
Query: 451 QVLDLSGNNLQILPQEAFARTGLVNLQRVYLRSCNIGQIHDRAFKGLTNLVELDLSQNLL 630
+VL ++G+ ++ + F GL NLQ ++L I ++ F+ L++L EL L NL+
Sbjct: 821 RVLYVNGSGIESIQNRTF--NGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI 878
Query: 631 TQIPSNSFKDAPFLRDLTLAQNPIXKF 711
I + +F L L L+ N + F
Sbjct: 879 GFIGNLTFLPLRSLEILRLSGNRLVTF 905
Score = 30.3 bits (65), Expect = 0.024
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +1
Query: 391 TVECVDRALITVPEPVDPATQVLD---LSGNNLQILPQEAFARTGLVNLQRVYLRSCNIG 561
T+E D L TV + VL+ LSGN + + AF +L+ + L +
Sbjct: 387 TLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCS--DLKELDLSGNELT 444
Query: 562 QIHDRAFKGLTNLVELDLSQNLLTQIPSNSFKDAPFLRDLTLAQNPI 702
+ D A + L L LDL +N ++ + SF++ L L L N I
Sbjct: 445 SVPD-ALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI 490
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 26.6 bits (56), Expect = 0.30
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 632 HRFHQTVSKMHLFYETSPWLKIRYXS 709
H HQT S HL Y P L Y S
Sbjct: 353 HHHHQTQSLQHLHYRQPPTLSESYSS 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 306 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 217
H+ C Y PP ++K K + F F H
Sbjct: 95 HNGSCLYVPPGIFKSTCKIDITWFPFDDQH 124
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 306 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 217
H+ C Y PP ++K K + F F H
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDITWFPFDDQH 192
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 306 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 217
H+ C Y PP ++K K + F F H
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDITWFPFDDQH 192
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 6.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 521 TSPVLAKASCGNIWRLFPERSSTC 450
T P + K+SC R FP TC
Sbjct: 136 TPPAIFKSSCEIDVRYFPFDQQTC 159
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 306 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 217
H C Y PP ++K K + F F H
Sbjct: 95 HDGSCLYVPPGIFKSTCKMDVAWFPFDDQH 124
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 306 HHTDCHY*PPHVYKIQLKHSRSRF*FTKAH 217
H C Y PP ++K K + F F H
Sbjct: 95 HDGSCLYVPPGIFKSTCKMDIAWFPFDDQH 124
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,793
Number of Sequences: 438
Number of extensions: 4670
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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