Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M11
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 34 0.031
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 33 0.071
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.50
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 29 0.88
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 28 1.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 1.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.5
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 28 2.0
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 2.0
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 2.7
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 2.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 3.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.5
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 4.7
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 4.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 4.7
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 6.2
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 26 6.2
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 26 6.2
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 8.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 8.2
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 8.2
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 33.9 bits (74), Expect = 0.031
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Frame = +3
Query: 54 WIRWNQKIGVPVLIDNIDNFFKTLDDKI-------EKEQQQLKASRMKTELETKLAQETK 212
++ QK+ + L + IDN + LD + EK + LK S+ E +T+LA+ K
Sbjct: 599 FLSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAE--K 656
Query: 213 VHNELSERLAELSRRSGELD---NVCASLQSCL-TIADSDKNRLEN-AKETYQLVKELTG 377
H EL + +L ELD + C ++ + + + ++ +++ +E +L K+L
Sbjct: 657 YHEELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLTKQLDD 716
Query: 378 VRLDFSAPPNLAKGYIKNESRKVLQPFEVDSADSNAL 488
++ F G I +++R +L E + +N+L
Sbjct: 717 IKNQF--------GIISSKNRDLLSELEKSKSLNNSL 745
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 32.7 bits (71), Expect = 0.071
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +3
Query: 138 EKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVCASLQSCLTIADS 317
EKE ++ K S ++ ELE KLA+ + N+L + + S +L+ + + S I D
Sbjct: 375 EKEYEE-KISSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEELSKYVAS---IQDK 430
Query: 318 DKNRLENAKETYQLVKEL 371
++N +NA E +++L
Sbjct: 431 ERNNGQNALELQARIQQL 448
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 29.9 bits (64), Expect = 0.50
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Frame = +3
Query: 105 DNFFKTLDDKIEKEQQQLKASRMKTELETKLA-QETKVHNELSERLAELSRRSGELDNVC 281
+ F + + D +E EQQQLK + E ET+ A ET+ + + E L E EL N C
Sbjct: 142 EEFERQITDLLE-EQQQLKLEIERLEAETERANSETEQYEKQKEALEE---EYEELRNEC 197
Query: 282 ASLQSCLTIADSDKNRLENAKETYQ--LVKELTGVRLDFSAPPNLAKGYIKNESRKVLQP 455
L D++ L++ E + L K+++ ++ P + +E K++
Sbjct: 198 LKHDPQL---DAEIRTLQDTFEEVERTLTKQVSDAKI-ADKPLKDSMFNSNSEKEKIMHA 253
Query: 456 FEVDSADSNALWNLIQ 503
E D++ IQ
Sbjct: 254 LEKAEKDADIYSEFIQ 269
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 99 NIDNFFKTLDDKIEKEQQQLKASRMKTELETKLAQETKVHNELSERLA 242
N FF+T DD + + + ++K +++ T K+H++L E+ A
Sbjct: 150 NPAEFFQTTDDLVGRTENRVKKDQIENNELTNQPFSGKLHSKLKEKAA 197
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 309 ADSDKNRLENAKETYQLVKELTGVRLDFSAPPNLAKGYIKNESRKVLQPFEVDSADSNAL 488
A ++K R AK + +E + ++ NL K S + + S + +
Sbjct: 195 APNEKKRKRRAKAAEREAQEAEELSMELGLDENLKKRRKAGASDEEALSALIRSRQKSRM 254
Query: 489 WNLIQSVSGDWSDKENKPR 545
+NLI ++ +S KP+
Sbjct: 255 YNLISNLESKYSKSSTKPK 273
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +3
Query: 90 LIDNIDNFFKTLDDKIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGEL 269
L+ + DN L+++IE QL S++KTE+E+ + + + LS L E R + EL
Sbjct: 682 LVKSNDNKL-LLNEQIESLNDQL--SQLKTEMESVTTSKESLADYLS-NLKE--RHNDEL 735
Query: 270 DNVCASL---QSCLTIADSDKNRLENAKETYQLVKE 368
D++ L + L+ S K+ +E Y ++E
Sbjct: 736 DSLNKKLREFEGILSSNSSLKSEIEERNNQYVTLRE 771
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 117 KTLDDKIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVCASLQS 296
KTL +K+EK + S++ EL+ +A + + + +LS R E DN+ S +
Sbjct: 281 KTLQEKLEKCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRISEFDNL-KSERD 339
Query: 297 CLTIADSDKNRL 332
L+I + +L
Sbjct: 340 TLSIKNEKLEKL 351
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +3
Query: 102 IDNFFKTLDDKIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVC 281
+ F + K+ EQ++ + E + ++ VH RLA ++ R + +
Sbjct: 307 VQGVFLPIKTKLFDEQEKTQLPYEVNEFCSTNREKLNVH-----RLALMTFRDYMVLPIA 361
Query: 282 ASLQSCLTIADSDKNRLENAKET----YQLVKELTGVRLDFS 395
+Q C+ A+S +N L+NA E +Q++ L VR + S
Sbjct: 362 NRIQICIGRAESAENALDNAGEVFARLFQILSLLASVRTNDS 403
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 132 KIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVCAS 287
K+E E+ L+ S + + L Q + N+L R LS R EL+NV AS
Sbjct: 287 KLESERVVLEQSDLLHKKHQMLIQ---LENDLQFREQRLSARESELENVIAS 335
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/84 (23%), Positives = 40/84 (47%)
Frame = +3
Query: 105 DNFFKTLDDKIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVCA 284
D F K D+ E Q + K +KT + +E K + EL++ E+D + A
Sbjct: 46 DLFGKHFDETFEIYQPK-KIRVLKTREVQYIEEEKKTNQELNDCRGNQLMTQEEIDELRA 104
Query: 285 SLQSCLTIADSDKNRLENAKETYQ 356
++++ A+ +L N+ +T++
Sbjct: 105 NIKAGGLRAEEAIKQLTNSSKTFE 128
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 126 DDKIEKEQQQLKASRMKTELETK-LAQETKVHNELS--ERLAELSRRSGELDNVCASLQS 296
D I KEQ+++K + ELET+ A + + ++ RLA+ + + ++V LQ+
Sbjct: 336 DSAIFKEQKKMKIQKRMRELETQSFADDDDLQQSIAMQRRLAQKRAKILKPEDVAEQLQN 395
Query: 297 CLTIAD 314
+ D
Sbjct: 396 AEEVTD 401
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 417 GYIKNESRKVLQPFEVDSADSNALWNLIQSVSGDWSDKENKP 542
GY++ S KV +E NAL +Q++S DW + + +P
Sbjct: 850 GYVR-PSMKVYMHYE---EARNALTERLQAISDDWEEDDTRP 887
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 3.5
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +3
Query: 102 IDNFFKTLDDKIEKEQQQLKASRMKTEL--ETKLAQETKVHN-ELSERLAELSRRSGELD 272
++N ++ +EK+ K R + E+ KL +E + E S+ + R+ E
Sbjct: 428 LNNRVSEINSSLEKQLTTQKELRSRFEILFPVKLQREDFTKDVEKSDLWIKSLRQEYESK 487
Query: 273 NVCASLQSCLTIADSDKNRLENAKETYQLVKELTGVR 383
N+ L T S +NRL+ E + +GVR
Sbjct: 488 NLLELLDKHQTALSSVENRLDEISEIVDSYHKYSGVR 524
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 132 KIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVCASLQSCLTIA 311
K + Q+L ++ LET + E+SE+ AEL+ + +L A L++
Sbjct: 521 KSQIRDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANKEN 580
Query: 312 DSDKNRLE 335
+ K +LE
Sbjct: 581 EILKQQLE 588
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 108 CRYYQLAQAHQSSDSIVSNNLNLKDSTIVRSV 13
C Y QL H SD + +N D +IVR+V
Sbjct: 366 CHYGQLENGHYISDVLFNNEWCHIDDSIVRTV 397
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 120 TLDDKIEKEQQQLKASRMK---TELETKLAQETKVHNELSERLAELSRRSGELDNVCASL 290
TL + + + Q +++ TEL+ + + V N+L + EL R ++ +L
Sbjct: 866 TLQNSFDLREHQTLVLQLQSNITELKQDITLQRTVRNQLEIQTTELKERLKFMEERQENL 925
Query: 291 QSCLTIADSDKNRLENAKETYQLVKEL 371
QS L A+ D + + E + EL
Sbjct: 926 QSKLIAANKDTTQNPDNVEVEAISIEL 952
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 204 ETKVHNELSERLAELSRRSGELDNVCASLQSCLTIADSDKNRLENAKETYQLVKELTGVR 383
ET + NEL RR + ++ +S+ S + +SD + +TY+ R
Sbjct: 306 ETNLLNELGR-----IRRGNQFQSLASSILSSGNLENSDDEDVSLGPQTYRFNSSFHPFR 360
Query: 384 LDFSAP 401
FSAP
Sbjct: 361 SAFSAP 366
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 261 GELDNVCASLQSCLTIADSDKNRL--ENAKETYQLVKE 368
GE + + L++CLT +DK RL ENA+ ++++E
Sbjct: 32 GECNTIKYELKACLTKDRNDKARLNRENARMRKKVIEE 69
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 6.2
Identities = 25/112 (22%), Positives = 47/112 (41%)
Frame = +3
Query: 135 IEKEQQQLKASRMKTELETKLAQETKVHNELSERLAELSRRSGELDNVCASLQSCLTIAD 314
+EKE + L E + + TK+ + + L L E+D + + + D
Sbjct: 133 LEKELKALSKDSETNEEQERKFWLTKLQIAVEDTLDSLPHIEMEIDLLKRAQAELMKSED 192
Query: 315 SDKNRLENAKETYQLVKELTGVRLDFSAPPNLAKGYIKNESRKVLQPFEVDS 470
S + E + + KE + RLD + + I +++ + LQPF + S
Sbjct: 193 SPEKDEETLRREERKQKEGSSWRLDLN-----TRDKILDKNNRPLQPFTIVS 239
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 8.2
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 108 NFFKTLDDKIEKEQQQLKASRMKTELETKLAQETKVHNELSERLAE--LSRRSGELDNVC 281
N F DK+E+E QQLK S + L+ L Q + N ++++A + ++ V
Sbjct: 531 NAFDAESDKLERELQQLKLSSHNSMLQ--LDQRIQSINIEADQIAHACMEYKNNIYKEVA 588
Query: 282 ASLQSCLTIADSDKNRLENAKETYQLVKEL 371
L + ++ LE+ K YQ KEL
Sbjct: 589 FVLGEIIHFKLHVQDSLEDLKMDYQ--KEL 616
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 93 IDNIDNFFKTLDDKIEKEQQQLKA--SRMKTELETKLAQETKVHNELSERLAELSRRSGE 266
ID + + + L D +E+++ ++ RM E+ TKL + + R + R
Sbjct: 314 IDELQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKER 373
Query: 267 LDNVCASLQ 293
L SLQ
Sbjct: 374 LSEHLKSLQ 382
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 300 LTIADSDKNRLENAKETYQLVKELTGVRLDFSAPPNLAKGYIKNESRKVLQPFEVDSADS 479
L I D D N L N+K+ +Q ++ G F L YI +P + D D+
Sbjct: 246 LFIHDEDNNDLSNSKQIFQQMRRSLGANSHFI---RLRSNYIS------AKPLDTDRYDT 296
Query: 480 NALWNL 497
+++ +L
Sbjct: 297 SSIQSL 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,791
Number of Sequences: 5004
Number of extensions: 52860
Number of successful extensions: 191
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -