Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M09
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 65 6e-11
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 30 2.8
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 30 2.8
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 28 8.6
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 28 8.6
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 28 8.6
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 65.3 bits (152), Expect = 6e-11
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Frame = +2
Query: 245 FWHTLTEMKLEVDKLKETTKQIFGRFTYRC--DIGSVFEVDGTSF---NKTPHLEQQYHH 409
FW L +KL+V ++ I G +T R I S+F + S + ++
Sbjct: 28 FWDALRRLKLDVLGTDDSPIPITGYYTPRQYEKIASLFRICPESILPPSANSFGDRNNCP 87
Query: 410 VMGTIMNKNTIEDFKSIDKASLLNSIGEMIWSNLRXRTWITNPSALLNFFILSFADLKKF 589
V GT++N N + F+++D+A LL + + I +++ NP+ LL F ++SFADLK +
Sbjct: 88 VPGTLLNTNNMRGFQNLDRALLLKAEAKKILHDIKSGKVEENPALLLRFLVISFADLKNW 147
Query: 590 HYYYWFAFPA 619
YY AFP+
Sbjct: 148 KVYYNVAFPS 157
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 578 LKKFHYYYWFAFPAPSQPTVHMKGRSTKISDYFNN--KQLETLSQCYKSLEENK 733
L++F W P+P PT S +S Y N +++ T+S ++ + + K
Sbjct: 645 LRQFKQSNWSCLPSPPHPTFSNGATSYNLSSYMMNETRRIPTISDTWQDISQLK 698
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 353 EVDGTSFNKTPHLEQQYHHVMGTIMNKNTIEDFKSIDKASLLNSIGEMIWSNLRXRTW 526
++ G P + + VM ++KN+IED ++ SL +S+ +I SN + + W
Sbjct: 385 DLSGLGVTSVPPAAWETNDVMKLDLSKNSIEDLP--NELSLCSSLQSLILSNNKIKRW 440
>08_01_0685 +
6025975-6026074,6026168-6026357,6026963-6027034,
6027187-6027258,6027354-6027425,6027784-6027855,
6027980-6028051,6028134-6028205,6028483-6028554,
6028791-6028865,6028970-6029041,6029134-6029199,
6029267-6029332,6029409-6029453,6029542-6029606,
6029697-6030076,6030455-6030653,6030725-6030883,
6030966-6031084,6031156-6031200,6031226-6031791,
6031871-6032021,6032117-6032454,6033702-6033765,
6034329-6034370,6035572-6035575,6035853-6036039,
6037252-6037323,6037687-6037758,6037867-6037938,
6038019-6038090,6038651-6038725,6038815-6038886,
6038988-6039053,6039163-6039228,6039348-6039392,
6039469-6039533,6039615-6039994,6040070-6040202,
6040354-6040512,6040599-6040717,6040805-6041015,
6041155-6041386,6041469-6041619,6041725-6042084
Length = 1952
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 257 GYARMMDERKTKTAHTVLFLFGFVLPTY 174
G AR+ DE+KT + + FG++ P Y
Sbjct: 864 GLARLYDEKKTHVSTGIAGTFGYLAPEY 891
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 621 PANPPFT*KEEARKSQITSTTNN*KLYLNVTNHLKKTKELFCC 749
PANP ++ ++T + N + +V +HLKK + F C
Sbjct: 1133 PANPKSPRSKDVASDEMTDPSPNVSVKYDVISHLKKYQPCFQC 1175
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 257 GYARMMDERKTKTAHTVLFLFGFVLPTYFQHNKI 156
G A++ DE+KT + + FG++ P Y ++
Sbjct: 716 GLAKLYDEKKTHISTAIAGTFGYLAPEYAMRGRL 749
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,084
Number of Sequences: 37544
Number of extensions: 388982
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -