Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M07
         (939 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   2.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   7.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   7.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 735 GGGRXGXXGGGGG 697
           GGGR G  G GGG
Sbjct: 96  GGGRDGDRGDGGG 108


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 659 ADXXGPXPPXPPXPPPPPXXPXRP 730
           A+     P  PP P PPP     P
Sbjct: 88  AEKVSVSPTTPPTPSPPPEERLTP 111


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 676 PPXXXTTPXPPPXXPXPPPP 735
           P    T+P P P  P  P P
Sbjct: 73  PSDGTTSPEPDPEIPVAPEP 92


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 706 PPXXPXPPPPPH 741
           PP  P P PP H
Sbjct: 115 PPLTPSPGPPSH 126


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 674 PXPPXPPXPPPPPXXP 721
           P P  PP P PP   P
Sbjct: 176 PLPQVPPLPLPPIFAP 191


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 674 PXPPXPPXPPPPPXXP 721
           P P  PP P PP   P
Sbjct: 176 PLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,599
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)