Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M03
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.043
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.2  
12_02_1188 + 26801833-26802225                                         30   2.8  
03_06_0149 - 31987183-31987630,31987813-31987874                       30   2.8  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   4.9  
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    29   6.5  
04_01_0154 - 1775693-1775942,1776834-1777588                           28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 283 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 176
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 100 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 246
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 253 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 155
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 289 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 179
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 560 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 462
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -2

Query: 659 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 480
           RN + AN    A+S    A     N  S       S      SSSVA   PP + L ST 
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262

Query: 479 YIPRSANPVTS 447
            +PR  NP+ +
Sbjct: 263 PVPR--NPIAA 271


>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -3

Query: 649 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 527
           CL  ++PP PA +C     LPD +  T+   +  F R      VLL
Sbjct: 46  CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -3

Query: 262 REKGGQVSGKRQGRN--RRAHEGAXQGETPGIFIVLSGFATSDLSVDFCDARQGGGALWK 89
           RE+GG  + +R+  +  RR   G   G  P       G     L +    ARQ GGA  +
Sbjct: 79  RERGGGGAARRRAASSSRRRRRGKSVGG-PSSRRRRRGKTAGGLKLPTTAARQDGGATRR 137

Query: 88  N-AKQRRPFYR 59
           N +++RRP +R
Sbjct: 138 NSSRRRRPRWR 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,234,531
Number of Sequences: 37544
Number of extensions: 569633
Number of successful extensions: 1628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)