Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M03
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna ...    29   5.9  
U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna ...    29   5.9  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform b protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 112 QGGGALWKNAKQRRP--FYRFLAKI 44
           +GGGALW +A +  P  FY+F A++
Sbjct: 141 EGGGALWLDATKTSPFHFYQFFAQL 165


>U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform a protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 112 QGGGALWKNAKQRRP--FYRFLAKI 44
           +GGGALW +A +  P  FY+F A++
Sbjct: 261 EGGGALWLDATKTSPFHFYQFFAQL 285


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 58   TCKKACVAWRFSIVLRPPDEHHKNRRSSQRW 150
            TC++AC  WR   V   P EH   + +  RW
Sbjct: 1776 TCERACGKWRNVAVCELPAEHGDCQLAIPRW 1806


>Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK930.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 718 ERQTPVEKIKGSS*DPFFLRVICCLQTKKPPLPAVVCLPDQELPTLFPKVTGFSRAQIPN 539
           E    + K++ S  +  F +V C  QT  PP P+V  +P  +LP     +   +  Q P+
Sbjct: 175 ESMNIIHKLETSEEEELF-KVTCARQTTDPPTPSVPRVP-SDLPAFLQTLLNNAAMQQPS 232


>U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical
           protein B0207.2 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +3

Query: 297 VGISVRCRSFAPSWAVCTNPPXQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARY 476
           VG  + C     +   C NP    + C L  +Y  E  PV  D +     TG R    R+
Sbjct: 21  VGTMLACALCIANPGACANPMWYTNFCLLLHDYMQEMYPVHPDGTSSPKMTGLRAQMQRH 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,451
Number of Sequences: 27780
Number of extensions: 425443
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)