Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M01
         (1139 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0082 - 4060018-4061604                                           31   1.7  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           29   6.8  

>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 913  LXPXLPLPXGPXXPLPSPLXPXXPRXSXXXLTLAPXYLPA 1032
            L P +P+P  P  P+P+P  P  P      +T AP   P+
Sbjct: 415  LAPPIPMPPAPAPPVPTPSMP-SPTVPAPPVTAAPATAPS 453



 Score = 29.9 bits (64), Expect = 3.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 913  LXPXLPLPXGPXXPLPSPLXPXXPRXSXXXLTLAP 1017
            L   +P P  P  P+P+PL P  P       T++P
Sbjct: 180  LATHVPTPPAPAPPVPTPLAPAPPADVPPGFTVSP 214


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 919  PXLPLPXGPXXPLPSPLXPXXPRXSXXXLTLAPXYLPA 1032
            P +P+P  P  P+P+P  P  P      +T+ P   P+
Sbjct: 526  PPIPMPPAPAPPIPTPSMP-FPTVPAPPVTVPPATAPS 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,846
Number of Sequences: 37544
Number of extensions: 126850
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3456450016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)