Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L24
         (889 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    85   2e-18
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   1.0  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   9.4  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 85.4 bits (202), Expect = 2e-18
 Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
 Frame = +1

Query: 160 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 339
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT  EL   +      G
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRG 59

Query: 340 NGTIDFPEFLTMMA--RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 513
              I F EFL + +  +K K+    E+  E  +++DK+ +G +  AEL H +T LGE+L 
Sbjct: 60  EKKIKFEEFLPIFSQVKKEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLD 119

Query: 514 DEEVDEMIREA--DIDGDGQVNYEEFVTMM 597
           D E+D ++++     D DG + Y  F+  M
Sbjct: 120 DVELDNVMKDCMDPEDDDGNIPYAPFLKKM 149


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 626  CVKSREFKYTFCFMTHNISIVLDLHFSSC 712
            C +     Y F   T NIS + + H+SSC
Sbjct: 3093 CYEQHGLSYVFPHNTSNISGITEDHYSSC 3121


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 626  CVKSREFKYTFCFMTHNISIVLDLHFSSC 712
            C +     Y F   T NI  + + H+SSC
Sbjct: 3090 CYEQHGLSYVFPHNTSNIIGITEDHYSSC 3118


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 439  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 567
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,164
Number of Sequences: 2352
Number of extensions: 11734
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95507181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)