Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L23
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    27   4.6  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.1  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   6.1  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    26   8.1  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/83 (22%), Positives = 37/83 (44%)
 Frame = +1

Query: 376 LQGVPFSMSKELQMSANKDSYAREISDLLAFLTNKITMNNYEYDFSVERSVIKEC*RTVE 555
           ++G+P +  +   + A+ D     +SD +  LT  I  +N+   F  +  V +    TV+
Sbjct: 50  VRGIPQNRVRNWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVERRRGITVK 109

Query: 556 IITFCDN*YNLSSNMYFIGVVDS 624
             T C   Y      Y + ++D+
Sbjct: 110 AQT-CSMIYYYHGQSYLLNLIDT 131


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 257 GSTTTNPSSDFGPGIGGVSSSTGDD 183
           G    NP++ F PG  G SS   DD
Sbjct: 354 GFDCINPANPFSPGYSGKSSMKSDD 378


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +3

Query: 678 QHMAHLMVNGYCLSFLFQHL--KEILXSR 758
           +H+A+++V G+CL F+  ++   ++L SR
Sbjct: 294 RHLAYVIVAGFCLYFILSYMFFSKLLDSR 322


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 363 LLGSGPRQRCGWGRSLR 313
           LL S P  RCGWG S R
Sbjct: 211 LLWSDPDDRCGWGISPR 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,579
Number of Sequences: 5004
Number of extensions: 66505
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)