Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L22
         (1048 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal...    59   2e-08
AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.      59   2e-08

>BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal
           protein S18C protein.
          Length = 142

 Score = 59.3 bits (137), Expect = 2e-08
 Identities = 35/96 (36%), Positives = 51/96 (53%)
 Frame = +3

Query: 192 STNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNXRLLSQFQSPYTVQNLPEAYNW 371
           S  +  + D P+ MENP+K+ LK+CILC  ++  DYKN +LLSQF SP+T   +   +  
Sbjct: 41  SQQVSSNEDLPISMENPYKEPLKKCILCGKHV--DYKNVQLLSQFVSPFT-GCIYGRHIT 97

Query: 372 SM*XKTDATGAGXNQGLRI*PIWPXTYKHKIFLXDP 479
            +  K         +  +I    P TYK   +L DP
Sbjct: 98  GLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDP 133



 Score = 31.1 bits (67), Expect = 7.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 337 TRCRIYPRHITGLCXRKQMQLEXXITK 417
           T C IY RHITGLC +KQ ++   I +
Sbjct: 88  TGC-IYGRHITGLCGKKQKEITKAIKR 113


>AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.
          Length = 142

 Score = 59.3 bits (137), Expect = 2e-08
 Identities = 35/96 (36%), Positives = 51/96 (53%)
 Frame = +3

Query: 192 STNLKPDPDAPVEMENPFKKELKQCILCKLNIDPDYKNXRLLSQFQSPYTVQNLPEAYNW 371
           S  +  + D P+ MENP+K+ LK+CILC  ++  DYKN +LLSQF SP+T   +   +  
Sbjct: 41  SQQVSSNEDLPISMENPYKEPLKKCILCGKHV--DYKNVQLLSQFVSPFT-GCIYGRHIT 97

Query: 372 SM*XKTDATGAGXNQGLRI*PIWPXTYKHKIFLXDP 479
            +  K         +  +I    P TYK   +L DP
Sbjct: 98  GLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDP 133



 Score = 31.1 bits (67), Expect = 7.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 337 TRCRIYPRHITGLCXRKQMQLEXXITK 417
           T C IY RHITGLC +KQ ++   I +
Sbjct: 88  TGC-IYGRHITGLCGKKQKEITKAIKR 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,020,737
Number of Sequences: 237096
Number of extensions: 1623466
Number of successful extensions: 2632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2630
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14207814782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)