Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L22
         (1048 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...    48   1e-05
L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical pr...    30   3.2  
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    28   9.6  

>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 117 ALFKSFFARQMLSTHQAVLSTFRTQSTNLKPDPDAPVEMEN-PFKKELKQCILCKLNIDP 293
           +L +SF   Q   T +   S+  TQ +      D PV +EN P+ KE ++  LC   ++ 
Sbjct: 7   SLVRSFIRPQ---TFRLCSSSSTTQGSPSVSSDDEPVILENNPYTKEPRKSFLCSTGVEL 63

Query: 294 DYKNXRLLSQFQSPYT 341
           DYKN RLL QF S ++
Sbjct: 64  DYKNSRLLQQFVSTFS 79



 Score = 29.5 bits (63), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 346 RIYPRHITGLCXRKQMQLEXXITK 417
           R+Y RHITGLC   + +L   I K
Sbjct: 81  RVYDRHITGLCDENKKKLIEAIAK 104


>L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical
           protein ZC262.8 protein.
          Length = 183

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 IYPRHITGLCXRKQMQLEXXITKXSGFSLYG 441
           + PR +TGLC ++Q+++E  + +     L+G
Sbjct: 97  VLPRQLTGLCKKQQLRMERCVMQAFWSGLFG 127


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 126 KSFFARQMLSTHQAVLSTFRTQSTNLKPDPDAPVEMENPF 245
           KSF + ++L  HQ +  T ++   +LK   DAPV M+  F
Sbjct: 27  KSFSSTKLLQQHQQMFHTDKSVLLSLK-STDAPVGMDRAF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,504
Number of Sequences: 27780
Number of extensions: 238517
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2782955308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)