Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L20
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    62   1e-10
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       31   0.27 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    30   0.47 
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.3  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    26   7.6  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.6  

>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
 Frame = +2

Query: 122 DAVKFGDFTTKTGIKTPAYFDLRVIVSYPDIMELTSNMLYDLAVKDSQFDHLCGVPYTAL 301
           + +KFG FT K+G K+P +F+        D+  L       +   +  FD + G  Y  +
Sbjct: 15  NVLKFGTFTLKSGRKSPYFFNSGNFTHGADLCALAEAYAETIIAMNVDFDVIFGPAYKGI 74

Query: 302 PIATLLSIQAKKP------MLMRRKETKSYGTKKSIEGHFKKDDTCLIIEDVITSGSSIL 463
            +A + +++  +           RKE KS+G   ++ G   +    L+++DVIT+G++I 
Sbjct: 75  SLAAITAVKLYEKTGKSYGFAYNRKEAKSHGEGGNLVGAEMEGKKVLLLDDVITAGTAIR 134

Query: 464 ETVKDLKNEGLVTTEAAIILDREQ 535
           E +  L+ + +      ++LDR++
Sbjct: 135 EAISFLEPKHVKLAGIVLLLDRQE 158


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 389 IEGHFKKDDTCLIIEDVITSGSSILETVKDLKNEGLVT-TEAAIILDREQGGRENLAKNG 565
           ++   KKD  CL   D+   G  I E  +DL   G VT T  AI++      +E +  + 
Sbjct: 1   MDDFLKKDLGCLRSGDLKKCGELICEICRDLYTSGWVTGTGDAIVIAPSGVQKERMELHH 60

Query: 566 IHVKSLFT 589
           + V SL T
Sbjct: 61  LFVMSLIT 68


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 272 HLCGVPYTALPIATLLSIQA----KKPMLMRRKETKSYGTKKSIEGHFKKDD 415
           HLC +PYT  P +++  I+      K    RR    S  T+KSI  H K  D
Sbjct: 539 HLCTLPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSI-SHSKNTD 589


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -1

Query: 742 CKSILFSYGRKHVP*VFYNRSLCFIQVIFYCNYNFIXYFLVF 617
           C  I   +G+K++P   + ++  F+     C   +  ++LVF
Sbjct: 705 CMLIPLVFGKKNLPGTLFAQTFAFVTFNKVCTSQYFMWYLVF 746


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 332 KKPMLMRRKETKSYGTKKSIEGHFKKDDTC 421
           K  +LM   E   +G  + I G FKK D C
Sbjct: 75  KNRLLMNCTEFDDHGNVRVISGDFKKMDLC 104


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 558 LAKFSLPPCSRSKIMAASVVTSPSFFKSLTVSS 460
           L+K  LPP S SKIM  S+   P+      +SS
Sbjct: 60  LSKSPLPPFSPSKIMNRSISVPPTNISVPQISS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,191
Number of Sequences: 5004
Number of extensions: 62948
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)