Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L18
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.53 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 765  PPXXXLXSPPXPPXQEPLXPSXPPXXRWXKTXTPPLYP 878
            PP     +PP PP   P  PS PP      +  PP  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 744 PXFPPGKPPXXXLXSPPXPPXQEPLXPSXPP 836
           P  PP  PP     +PP  P   P  P  PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
 Frame = +3

Query: 744 PXFPPGKPPXXXLXSPPXPPXQEPLXPSXP--PXXRWXKTXTPPLYPXXEXXXRFXXPTP 917
           P  PP  PP      P   P   PL PS P  P         PPL P          P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +3

Query: 753 PPGKPPXXXLXSPPXPPXQEP--LXPSXPPXXRWXKTXTPPL 872
           PP       + +PP PP   P    P+ PP     +T TPP+
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 753 PPGKPPXXXLXSPPXPPXQEPLXPSXPPXXRWXK 854
           PPG PP      PP P  + P  P  PP   + K
Sbjct: 5   PPGNPPPP----PPPPGFEPPSQPPPPPPPGYVK 34


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 744 PXFPPGKPPXXXLXSPPXPPXQEPLXPSXPP 836
           P  P   P       PP PP +  + PS PP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 476 PPKXPTXQXPXPXPPXX*KXXKXPPPXP 393
           PP  P    P P PP        PPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 756 PGKPPXXXLXSPPXPPXQEPLXPSXPP 836
           P  PP     +PP P    P+  S PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.148    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,736
Number of Sequences: 5004
Number of extensions: 19003
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)