Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_L16
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 28 2.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 6.2
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 26 6.2
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 8.2
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 8.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 8.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 8.2
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 158 PIKKMRKRKSLKLNEEDSDGSGQ----GAEPEEF-QDSGEDWTPDADSNEPASRTGRKRV 322
P KK LNE+ S + + EEF +DS + D+NEP+++ K V
Sbjct: 210 PKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTV 269
Query: 323 SKAPVN 340
+ VN
Sbjct: 270 PEDVVN 275
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 176 KRKSLKLNE-EDSDGSGQGAEPEEFQDSGEDWTPDADSN-EPASRTGRKRVSKAPVNNTK 349
K+K LNE ED D +G G E D E +A+++ E +S+ + S A +
Sbjct: 59 KKKDSSLNESEDEDFAGFGESASE-NDELESAESEAENDEESSSQKSNSKESHAQRKKLQ 117
Query: 350 KKRK 361
K+RK
Sbjct: 118 KERK 121
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 332 VPLIHVFCQYEMQVRSNRRPASNLHQSPEILLVQRPALTHPNL-LRLTL 189
+PL+ + C + R AS+LHQ +L LT P+L LRL L
Sbjct: 386 IPLVTITC-LTSALAEYARDASDLHQLQNSILRVNSTLTSPSLDLRLEL 433
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 283
EE+ D G+G E EE +D G+ D D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 578 VISKLDELNLWKIDGKALLQKFIPMESN 661
V S+L EL++WK K + P+ESN
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESN 259
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = +2
Query: 197 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKK 352
+EEDS+ S + E + E+ + + ++ + R+G K P K
Sbjct: 96 SEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFLKKPEKEEAK 147
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 194 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 301
++ +D D S Q A EE+ D +D D D NE ++
Sbjct: 228 IDGQDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 188 LKLNEEDSDGSGQGAEPEE---FQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKR 358
L L+EE+S+ S + + ++ +D G + D D +K+ SK + KK R
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDR 195
Query: 359 K 361
K
Sbjct: 196 K 196
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 626 LCHQFSTSSVHQVLILQYL 570
LCHQ S+S +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,264
Number of Sequences: 5004
Number of extensions: 74936
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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