Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_L16
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0454 + 19199063-19200757,19202201-19202287 31 1.6
07_03_1151 + 24385272-24386543 30 2.8
01_06_0545 + 30123621-30124142 30 2.8
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 29 3.7
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 3.7
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 29 3.7
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 29 3.7
06_01_0127 - 977667-978719,978875-979051 29 4.9
05_05_0220 + 23380290-23381581,23381997-23383458 29 4.9
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 29 4.9
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 29 6.5
07_01_0230 - 1679165-1681108 28 8.6
05_01_0210 + 1583176-1584177 28 8.6
02_05_0509 - 29630224-29630328,29630408-29630500,29630669-296307... 28 8.6
02_02_0495 + 10954305-10954349,10954660-10955079 28 8.6
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +2
Query: 137 SYFFRTIPIKKMRKRKSLKLNEEDSDGSGQGAE--PEEF-----QDSGEDWTPDADSNEP 295
SY + K R+R + K +G G+ +E PEE ++ +D SNE
Sbjct: 462 SYEINNVKKKGRRRRAAKKGGTYADNGQGRKSENQPEESRHNNDENGADDKMEGPSSNED 521
Query: 296 ASRTGRKRVSKAPVNNTKKKRK 361
++ ++ K NTKK +K
Sbjct: 522 SAAASKEDQQKGKTGNTKKNKK 543
>07_03_1151 + 24385272-24386543
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 179 RKSLKLNEEDSDGSGQGAEPEEFQDSGE 262
+K+ +L+E D DG G+ E EE D GE
Sbjct: 61 KKTRRLSEFDGDGDGEEVEVEEGGDGGE 88
>01_06_0545 + 30123621-30124142
Length = 173
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 658 KWKSFTQMYMCVFWGGMLTTVTIITP*PKYWIAIPHRL 771
KW + + C+F GG+ T +I P Y +P RL
Sbjct: 30 KWIAALLLVSCMFAGGLYTLTPLIAKDPLYLARVPWRL 67
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = +2
Query: 206 DSDGSGQGAEPEEFQDSGEDWTPDADS---NEP---ASRTGRKRVS-KAPVNNTKKKR 358
DSDGSG E EE+ + ED D+D+ N P + +G KR S K+P T K +
Sbjct: 523 DSDGSGSIKELEEYIFALEDGGHDSDTIARNSPTTDGTYSGHKRRSVKSPTKKTLKHK 580
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 233 EPEEFQDSGEDWTPDADSNEPASRTGR 313
E EF D G D PDA S+ P R GR
Sbjct: 636 EKWEFIDEGRDNNPDASSDMPHGRRGR 662
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = +2
Query: 206 DSDGSGQGAEPEEFQDSGEDWTPDADS---NEP---ASRTGRKRVS-KAPVNNTKKKR 358
DSDGSG E EE+ + ED D+D+ N P + +G KR S K+P T K +
Sbjct: 1045 DSDGSGSIKELEEYIFALEDGGHDSDTIARNSPTTDGTYSGHKRRSVKSPTKKTLKHK 1102
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +2
Query: 125 SVSLSYFFRTIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDAD---SNEP 295
S S+S R P+K+ + L D G G P + E +P + S P
Sbjct: 411 SKSMSISPRRSPVKRSAISPKISLISRSPDVQGHGRSPVRAPERSESRSPPREKSISMSP 470
Query: 296 ASRTGRKRVSKAPV 337
R+ R+ S++P+
Sbjct: 471 QRRSARRSKSRSPL 484
>06_01_0127 - 977667-978719,978875-979051
Length = 409
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 508 CTKAFPFRKFCLAEIRCKMGWRYCN 582
C + P+R+ CLA +C+ G Y N
Sbjct: 130 CARLGPYRRGCLANSQCQFGITYAN 154
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 122 GSVSLSYFFRTIPIKKMRKRKSLKLNEEDSDGSGQGAEPEEFQ-DSGEDWTPDADSNEPA 298
G++ +S+FF TIP + L ++ D+ SG +P F ++ D +A P+
Sbjct: 488 GNLPISHFFDTIPDSFILDNAGLCSSQRDNSCSGVMPKPIVFNPNASSDPLSEASPGAPS 547
Query: 299 SRTGRK 316
S+ +K
Sbjct: 548 SQHHKK 553
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +1
Query: 631 ITEIYPNG-----IKWKSFTQMYMCVFWGGMLTTVTIITP*PKYWIAIPHRL 771
I E YP+ +KW + C+F GG+ +++ P Y +P RL
Sbjct: 18 IGEAYPDARGFATLKWIVILLLVSCMFAGGLYALTPLVSKDPLYLARVPWRL 69
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 197 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNT 346
+E+D D G ++ +E +D GE + SNE R K VS V++T
Sbjct: 141 DEDDDDDDGDDSD-DEMEDDGERYNRIPLSNEVVLRGHTKVVSALAVDHT 189
>07_01_0230 - 1679165-1681108
Length = 647
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 338 SPVPLIHVFCQYEMQVRSNRRPASN-LHQSPEILL 237
SP+ ++ F + ++V RRP +N H SP IL+
Sbjct: 506 SPLTDVYAFAIFVLEVTCGRRPINNYTHDSPTILV 540
>05_01_0210 + 1583176-1584177
Length = 333
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 173 RKRKSLKLNEEDSDGSGQGAE-PEEFQDSGEDWTPDADSNEPASRTGRKRVSKA 331
RK+ K ++D DG G G E EE D D D S + +KR KA
Sbjct: 173 RKKVKGKDPDDDHDGGGDGDEDDEEEADQQVDEEDDGASGDTTRAGSKKRRRKA 226
>02_05_0509 -
29630224-29630328,29630408-29630500,29630669-29630719,
29630864-29630930,29631181-29631227,29631300-29631350,
29631433-29631552,29632777-29632869,29633440-29633485,
29633577-29633629,29633800-29633839,29633938-29634623
Length = 483
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 200 EEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNN 343
E+ DG + E ++ +D +D TPDA A G A N
Sbjct: 130 EDGDDGEEEEEEDDDEEDDDDDSTPDASPRAEAKAEGESSTVMAGCAN 177
>02_02_0495 + 10954305-10954349,10954660-10955079
Length = 154
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 164 KKMRKRKSLKLNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRK 316
+ +R+R+ L++ + +GSG GAE E ++ E T + PASR G++
Sbjct: 91 ESLRRRQRLRIQPREVEGSG-GAE-EMPEERREMVTGGVEEAHPASRGGQE 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,551,123
Number of Sequences: 37544
Number of extensions: 445607
Number of successful extensions: 1524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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