Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_L15
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 43 5e-05
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 40 6e-04
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 35 0.018
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 34 0.031
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 27 3.6
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.6
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 4.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 4.7
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 4.7
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 26 6.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.2
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 43.2 bits (97), Expect = 5e-05
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 401 CGLCEEQKSKYCCPKCGVLYCSLGCYK 481
C +C E + KY CPKC YCSL C+K
Sbjct: 4 CSICNESEIKYKCPKCSFPYCSLPCWK 30
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 374 ITENTFAKICGLCEEQKSKYCCPKCGVLYCSLGCYKSDKHL-ECS 505
++EN IC C++ SKY CP+C +C L C K L +CS
Sbjct: 1 MSENRLG-ICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCS 44
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 34.7 bits (76), Expect = 0.018
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +2
Query: 344 IMDETADTTKITENTFAKICGLCEEQKSK-YCCPKCGVL-YCSLGCYKSD---KHLEC 502
I+ + D + + C C E+K K C C ++ YCS GC K+D LEC
Sbjct: 30 IIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLEC 87
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 33.9 bits (74), Expect = 0.031
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 395 KICGLCEEQKSKYCCPKCGVLYCSLGCYKSDKHLEC 502
K C +C KY C CG YCS GC C
Sbjct: 100 KFCNVCGYW-GKYACQNCGTSYCSKGCEVIHSETRC 134
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 473 CYKSDKHLECSENFYRDWV--NEELSSQNVDEES 568
C+K+ +E EN YR W NE + ++ D +S
Sbjct: 235 CFKTSSIIEMVENNYRTWCSQNERMVEEDFDVKS 268
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 418 FFT*STNFSKSIFCDLRCICCFVHYSSSGTD 326
FF+ T +S+ C+CC + Y ++ +D
Sbjct: 471 FFSDGTGSPQSLEVSFYCLCCILEYDTNDSD 501
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +2
Query: 284 TKVVQTAKYSDTVVISTTRRIMDETADTTKITE--NTFAKICGLCEEQKSKYCCPKCGVL 457
+K + ++ S + I + ++ DTT+I E N+ +++ G E K ++ P
Sbjct: 551 SKFIHSSSASPSPSIDMKKESLELKNDTTEIKEKKNSKSRVVGNTENSKDEFNNP----- 605
Query: 458 YCSLGCYKSDKHLECSENFYRDWVNEELSSQNVDE 562
+++++ ++ E++ +W +EE + NV+E
Sbjct: 606 -----LFETEEQID--ESWMENWNDEEETENNVEE 633
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 268 NSYLGNEGSTNGEI**YSGNQYHSKNNGRNSRYNE 372
+S+LG+ G+ N SGN Y++ N+G N++ ++
Sbjct: 554 SSFLGSSGNNNNNNNSNSGN-YNNNNSGNNNQQHQ 587
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 671 HRNHQSLYDHHFLSHQHYH*IH 606
H NH+S D H H H+H H
Sbjct: 285 HNNHESDKDLHHEGHHHHHHHH 306
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 739 TEDEKNEFEALISHGDVGSILHNGNPXG 822
TEDEK+ F L+ V I+ +GN G
Sbjct: 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIG 45
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 476 YKSDKHLECSENFYRDWVNEELSS--QNVDEESKRKMIEILKK 598
Y SDK C EN+ R+ EE+++ + + KR M+ + K+
Sbjct: 982 YASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEKE 1024
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,589
Number of Sequences: 5004
Number of extensions: 59987
Number of successful extensions: 233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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