Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L15
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   4.9  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 319 SGNQYHSKNNGRNSRYNEDHRKY 387
           S    H+ NN  N+ YN ++  Y
Sbjct: 319 SNKTIHNNNNYNNNNYNNNYNNY 341


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 271 SYLGNEGSTNGEI**YSGNQYHSKNNGRNSRYNEDHRKYF 390
           S L N+   N     Y+ N  +  NN  N+ YN + +K +
Sbjct: 316 SSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 316 YSGNQYHSKNNGRNSRYNEDHRKYF 390
           Y  + Y++ NN  N+ YN ++   +
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNY 113



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 325 NQYHSK-NNGRNSRYNEDHRKYF 390
           N Y++  NN  N+ YN +++K +
Sbjct: 95  NNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 316 YSGNQYHSKNNGRNSRYNEDHRKYF 390
           Y  + Y++ NN  N+ YN ++   +
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNY 113



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 325 NQYHSK-NNGRNSRYNEDHRKYF 390
           N Y++  NN  N+ YN +++K +
Sbjct: 95  NNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 319 SGNQYHSKNNGRNSRYNEDHRKYF 390
           S    H+ NN  N+ YN   + Y+
Sbjct: 86  SNKTIHNNNNYNNNNYNNYKKLYY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,852
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)