Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L14
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    60   6e-10
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    60   6e-10
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    60   6e-10
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    32   0.096

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +2

Query: 272 RFFSRNVIRDAVTYTEHAKRKTVTAMDVVYALKK 373
           + F  NVIRDAVTYTEHAKRKTVT++DVVY+LK+
Sbjct: 60  KLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKR 93



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 205 LARRGGVKRISGLIYEETRSVLKVFLE 285
           LARRGGVKRIS L+YEETR+VLK+FLE
Sbjct: 38  LARRGGVKRISALVYEETRAVLKLFLE 64


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +2

Query: 272 RFFSRNVIRDAVTYTEHAKRKTVTAMDVVYALKK 373
           + F  NVIRDAVTYTEHAKRKTVT++DVVY+LK+
Sbjct: 60  KLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKR 93



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 205 LARRGGVKRISGLIYEETRSVLKVFLE 285
           LARRGGVKRIS L+YEETR+VLK+FLE
Sbjct: 38  LARRGGVKRISALVYEETRAVLKLFLE 64


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 59.7 bits (138), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 31/34 (91%)
 Frame = +2

Query: 272 RFFSRNVIRDAVTYTEHAKRKTVTAMDVVYALKK 373
           + F  NVIRDAVTYTEHAKRKTVT++DVVY+LK+
Sbjct: 60  KLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKR 93



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +1

Query: 205 LARRGGVKRISGLIYEETRSVLKVFLE 285
           LARRGGVKRIS L+YEETR+VLK+FLE
Sbjct: 38  LARRGGVKRISALVYEETRAVLKLFLE 64


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 278 FSRNVIRDAVTYTEHAKRKTVTAMDVVYALKKARE 382
           F + +  D   + +HA RKT+   DVV  +K+ R+
Sbjct: 418 FFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQRK 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,765
Number of Sequences: 5004
Number of extensions: 19162
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)