Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L13
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   0.88 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.6  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   8.2  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 486 RIIRNNISGTIDSVNVASFHGDPMIIDHVV 397
           RI+R  ++G +D +   S   DP +++H++
Sbjct: 622 RILRKILAGEVDQIGDLSTLADPKVVEHII 651


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 316 TPQARGRSINLALSIRGRTALREVGLEDHMINNHGIPMKGRNIHRIDGS 462
           +P   GRS+   L I G    + + +    ++ HG+ ++G  I+RI GS
Sbjct: 774 SPTMFGRSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEG--IYRISGS 820


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 112 LKYIIXTYRAMFPSVGLEFKXKSLRMPIEVATV 14
           L+  +  Y A + SV LEF   +  +P++  TV
Sbjct: 795 LRTYLLAYAAFYDSVSLEFLATTFDLPVQRVTV 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,769,062
Number of Sequences: 5004
Number of extensions: 82687
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)