Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L12
         (955 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    26   0.50 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   8.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   8.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   8.1  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 621 P*RASQKSTLKSXVAKPDRTIXIPGVSPWKLPRALXLFPT 740
           P  A QK      V      + +PGV+ W  PR    FPT
Sbjct: 43  PATAPQKPDKWEDVMADIERVIMPGVTHWHSPRFHAYFPT 82


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 658 RWRNPTGLXPYQAFPPGSSLVRSPCSRP 741
           R+  P G    Q  PP  +LV +  +RP
Sbjct: 46  RFLAPKGFGGVQISPPNENLVVTSSNRP 73


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 658 RWRNPTGLXPYQAFPPGSSLVRSPCSRP 741
           R+  P G    Q  PP  +LV +  +RP
Sbjct: 47  RFLAPKGFGGVQISPPNENLVVTSSNRP 74


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 658 RWRNPTGLXPYQAFPPGSSLVRSPCSRP 741
           R+  P G    Q  PP  +LV +  +RP
Sbjct: 47  RFLAPKGFGGVQISPPNENLVVTSSNRP 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,518
Number of Sequences: 336
Number of extensions: 2923
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)