Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L12
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.059
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.059
 Identities = 22/84 (26%), Positives = 28/84 (33%)
 Frame = +1

Query: 670  PTGLXPYQAFPPGSSLVRSPCSRPGPLXXEYLSXPFLPFGXAVAXFPHSPTXXXVSPXPG 849
            P+G  P       +  V  P   P P+    ++ P +P        P         P P 
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175

Query: 850  XXXVPXPXPGAGVPXXPPRXXPQP 921
                P P P AGVP  PP     P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/67 (25%), Positives = 21/67 (31%)
 Frame = +1

Query: 700  PPGSSLVRSPCSRPGPLXXEYLSXPFLPFGXAVAXFPHSPTXXXVSPXPGXXXVPXPXPG 879
            PP         S P P+       P +P        P +P+     P P     P P P 
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP-APSGIPPVPKPSVAAPPVPKPS 1108

Query: 880  AGVPXXP 900
              VP  P
Sbjct: 1109 VAVPPVP 1115



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
 Frame = +1

Query: 670  PTGLXPYQAFPPGSSLVRSPCSRPGPLXXEYLSXPFLPF-GXAVAXFPHSPTXXXVSPXP 846
            P+G  P       +  V +P   P P+    ++ P +P     +   P         P P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAP-PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194

Query: 847  GXXXVPXPXPGAGVPXXPPRXXPQP 921
                 P P P  GVP  PP     P
Sbjct: 1195 SEAP-PVPKPSVGVPPVPPPSTAPP 1218


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 640 NRRSSXRWRNPTGLXPYQAFPPGSSLVRSPCSR-PGPLXXEY 762
           NR+ S + R  T   P ++ PP S  V +P S+ P P+   Y
Sbjct: 626 NRQYSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAY 667


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 808 PHSPTXXXVSPXPGXXXVPXPXPGAGVPXXPP 903
           P  P     +P P    VP P P  G P  PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +1

Query: 628 EHHKNRRSSXRWRNPTGLXPYQAF----PPG 708
           ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,115
Number of Sequences: 5004
Number of extensions: 41458
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)