Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L12
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protei...    28   8.6  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/73 (27%), Positives = 27/73 (36%)
 Frame = +1

Query: 685 PYQAFPPGSSLVRSPCSRPGPLXXEYLSXPFLPFGXAVAXFPHSPTXXXVSPXPGXXXVP 864
           P    PPG S+ +     P P+   ++  P  P G  +   P         P P    +P
Sbjct: 48  PSGILPPGQSIPKPSFFIPPPVPNGFIPPPPGPGG--IPPPPPMFAGGIPPPPPMMGGIP 105

Query: 865 XPXPGAGVPXXPP 903
            P P  G P  PP
Sbjct: 106 PPPPMFGAPPPPP 118


>U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protein 8
           protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/80 (28%), Positives = 27/80 (33%)
 Frame = +1

Query: 703 PGSSLVRSPCSRPGPLXXEYLSXPFLPFGXAVAXFPHSPTXXXVSPXPGXXXVPXPXPGA 882
           PG   ++ P  RPGP     L  P  P G      P  PT     P           PGA
Sbjct: 132 PGGC-IKCPPGRPGPRGPSGLVGPAGPAGDQGRHGPPGPTGGQGGPGEQG---DAGRPGA 187

Query: 883 GVPXXPPRXXPQPXXXFIPG 942
                PP    +P   + PG
Sbjct: 188 AGRPGPPGPRGEPGTEYRPG 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,460
Number of Sequences: 27780
Number of extensions: 286953
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)