Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L10
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   270   1e-73
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.88 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   1.5  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    28   2.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   4.7  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   8.2  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  270 bits (663), Expect = 1e-73
 Identities = 130/229 (56%), Positives = 167/229 (72%), Gaps = 1/229 (0%)
 Frame = +3

Query: 126 ERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQMKKKIKA 305
           E   + +GRR D+                      RGIKAK++ ++RR EKIQMKK IK 
Sbjct: 8   EESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQ 67

Query: 306 HEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQ 482
           HEE+N  +  ++   +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP+P+VR  
Sbjct: 68  HEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGV 127

Query: 483 ADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPE 662
           A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KKA+VTH E
Sbjct: 128 AEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKKANVTHKE 187

Query: 663 LKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKL 809
           L  T  LPIIGVKKNP S  YT LGV+TKGTVIEVN+SELGLVT  GK+
Sbjct: 188 LGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKV 236


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 350 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 177
           F  LL   F +L F+ F F F    F++   I YF SF    F  LF  F+ +  F +  
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170

Query: 176 FSL 168
           FSL
Sbjct: 171 FSL 173


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 618 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 740
           PM   F +    HP  K  FC+P + ++  P       LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/84 (26%), Positives = 45/84 (53%)
 Frame = +3

Query: 261 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 440
           E+ + K+++ ++     +K ++  TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 441 AGKWDVPIPKVRAQADAEVFKVLK 512
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 477  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 614
            A  +++  K+L +   K+   KR+V+++T +  N T    + +R++
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 311 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 189
           FV  D FL+   LF    LI +F+     F  LFS F    S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 330 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 464
           N  K +E    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,451
Number of Sequences: 5004
Number of extensions: 61745
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)