Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_L08
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 31 0.27
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 28 1.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 3.3
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 3.3
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c... 27 4.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 5.8
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 5.8
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 30.7 bits (66), Expect = 0.27
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1
Query: 723 HKCAIVQFLSKNGIQNLHLFCRCGNNILRFRTSSQM*LSDIGDQCCRALTYTSQLIVTGH 544
+KCAI +FL ++ L N+IL R S + D R L Y ++ G+
Sbjct: 1016 NKCAIKEFLERDISPQLTKMLLKSNDILGLREIG----SKVVDDRVRGLYYAQSQVLFGY 1071
Query: 543 V*AELLGSQC 514
+ L GS+C
Sbjct: 1072 YRSRLKGSRC 1081
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.9
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 547 TRDYELARIGQGSAALIAYVRQLHLTARS-KPQDVVTTPTEQVKVLDSIFGEELYN---G 714
T + L +I G + ++Y+ + R KP +++ T QVK+ D EL N G
Sbjct: 178 TGERPLGKIAFGVLSGLSYLHDRKIIHRDIKPSNILLTSKGQVKLCDFGVSGELVNSLAG 237
Query: 715 TF--VEWMASGGRWQSTSYLESARGWS 789
TF + + R SY S+ WS
Sbjct: 238 TFTGTSYYMAPERISGGSYTISSDIWS 264
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M K + PPPP+ EPG+ M PP
Sbjct: 212 MHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 225 MHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 238 MHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 251 MHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 264 MHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 277 MHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 290 MHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 303 MHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 246 MAEKTDQDNPPPPVE-EPGQAMDKPP 320
M + + PPPP+ EPG+ M PP
Sbjct: 316 MHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +3
Query: 270 NPPPPVEEPG-QAMDKPPEPKP 332
NPPPP PG + +PP P P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 418 PNELYRRLLPAMLFVLTFVTVMTMLLIYM 504
P+ Y+RL+ +LF T++T+LL+++
Sbjct: 954 PSNFYKRLIALLLFCWICSTLVTVLLVFV 982
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 273 PPPPVEEPGQAMDKPPEPKP 332
PPPP PG A PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 276 PPPVEEPGQAMDKPPEPKPNLIDKLVII 359
P P E+P + +KPP+ K + ++K I
Sbjct: 493 PVPKEKPSEKSEKPPKKKGSKLEKFCCI 520
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 595 IAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGE 699
I+Y++ L K DV+TTPT+ V V++ GE
Sbjct: 83 ISYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGE 117
>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 692 LERNCTMAHLWSG 730
L+ NCT+A LWSG
Sbjct: 126 LQHNCTLADLWSG 138
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 796 PVLTSPVLIPDSWCFAIVHQKPSTP-QMCHCTIPLQKWNPK 677
P TSP + P+ +I +PSTP ++ T+P K NPK
Sbjct: 426 PTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVP--KMNPK 464
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 276 VGYLDLSFRPLSLCFRYL-ALKKTQKIYI*INIYKPLMFFLYYLTEFMSI 130
+GY D SF+P +L F + +++ Q+IY +PL+ F+ T+ + I
Sbjct: 97 MGYCDQSFKPQTLQFPHRHTIQEYQRIYA-----QPLLPFIKLATDVLDI 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,749
Number of Sequences: 5004
Number of extensions: 70469
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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