Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L08
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.1  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 431 YNSFGGAFMNAGNVNXRAMCRFGKNYYKLVY 339
           YN++   + N  N N      + K YY + Y
Sbjct: 327 YNNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 743 PPEAIHSTNVPLYNS 699
           P E +H TN+  YNS
Sbjct: 654 PSERVHVTNMDQYNS 668


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 711 IVQFLSKNGIQNLHL 667
           I+QF++KNG  N +L
Sbjct: 488 ILQFITKNGTSNNYL 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,648
Number of Sequences: 438
Number of extensions: 5313
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)