Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_L05
(912 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 194 4e-49
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 194 4e-49
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 194 4e-49
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 194 4e-49
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 194 4e-49
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 192 1e-48
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.27
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.27
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 194 bits (473), Expect = 4e-49
Identities = 96/151 (63%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 179 YLAXRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLY 358
+LA RTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+
Sbjct: 34 FLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQ 93
Query: 359 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 538
++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG
Sbjct: 94 EVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFG 153
Query: 539 PAPGAPRSHTKPYVRTKGH--EKARPSRRAN 625
APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 154 KAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 194 bits (473), Expect = 4e-49
Identities = 96/151 (63%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 179 YLAXRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLY 358
+LA RTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+
Sbjct: 11 FLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQ 70
Query: 359 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 538
++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG
Sbjct: 71 EVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFG 130
Query: 539 PAPGAPRSHTKPYVRTKGH--EKARPSRRAN 625
APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 131 KAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 160
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 194 bits (473), Expect = 4e-49
Identities = 96/151 (63%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 179 YLAXRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLY 358
+LA RTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+
Sbjct: 34 FLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQ 93
Query: 359 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 538
++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG
Sbjct: 94 EVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFG 153
Query: 539 PAPGAPRSHTKPYVRTKGH--EKARPSRRAN 625
APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 154 KAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 194 bits (473), Expect = 4e-49
Identities = 96/151 (63%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 179 YLAXRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLY 358
+LA RTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+
Sbjct: 34 FLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQ 93
Query: 359 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 538
++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG
Sbjct: 94 EVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFG 153
Query: 539 PAPGAPRSHTKPYVRTKGH--EKARPSRRAN 625
APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 154 KAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 194 bits (473), Expect = 4e-49
Identities = 96/151 (63%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 179 YLAXRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLY 358
+LA RTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+
Sbjct: 34 FLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQ 93
Query: 359 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 538
++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG
Sbjct: 94 EVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFG 153
Query: 539 PAPGAPRSHTKPYVRTKGH--EKARPSRRAN 625
APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 154 KAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 192 bits (468), Expect = 1e-48
Identities = 95/151 (62%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Frame = +2
Query: 179 YLAXRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLY 358
+LA RTN+ FNQ+VL+RLFMSR NRPP+ +SR+ R MK P RE AVVVGT+T+DVR+
Sbjct: 34 FLARRTNSTFNQVVLKRLFMSRTNRPPLCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQ 93
Query: 359 KIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 538
++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG
Sbjct: 94 EVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFG 153
Query: 539 PAPGAPRSHTKPYVRTKGH--EKARPSRRAN 625
APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 154 KAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.27
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +1
Query: 316 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 480
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 481 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 594
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.27
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +1
Query: 316 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 480
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 481 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 594
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,304,637
Number of Sequences: 237096
Number of extensions: 2245239
Number of successful extensions: 4820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4818
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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