Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_L04
         (934 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S...    42   0.017
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R...    40   0.090
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary...    35   2.6  

>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
           S30-ubiquitin-like - Suberites domuncula (Sponge)
          Length = 134

 Score = 42.3 bits (95), Expect = 0.017
 Identities = 26/56 (46%), Positives = 30/56 (53%)
 Frame = +3

Query: 351 SLXRAGXVXGXTXKXEXQEXK*EXYWPSKXQXXXXXXXFVXXVXTFGRXRGPNSNS 518
           SL RAG V G T K E QE K +    +K +       FV  V  FGR RGPNSN+
Sbjct: 78  SLARAGKVRGQTPKVEAQEKKKKKTGRAKRRMQYNRR-FVNVVAQFGRRRGPNSNA 132


>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
           40S ribosomal protein S30 - Homo sapiens (Human)
          Length = 59

 Score = 39.9 bits (89), Expect = 0.090
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = +3

Query: 351 SLXRAGXVXGXTXKXEXQEXK*EXYWPSKXQXXXXXXXFVXXVXTFGRXRGPNSNS 518
           SL RAG V G T K   QE K +    +K +       FV  V TFG+ +GPN+NS
Sbjct: 5   SLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRR-FVNVVPTFGKKKGPNANS 59


>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
           Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
           latipes (Medaka fish) (Japanese ricefish)
          Length = 59

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +3

Query: 351 SLXRAGXVXGXTXKXEXQEXK*EXYWPSKXQXXXXXXXFVXXVXTFGRXRGPNSNS 518
           SL RAG V G T   +  E K E    +K +       FV  V TFG+ +G N+NS
Sbjct: 5   SLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRR-FVNVVPTFGKKKGANANS 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,079,023
Number of Sequences: 1657284
Number of extensions: 1633060
Number of successful extensions: 1528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85324527343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)