Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_K21
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 134 1e-32
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 48 1e-06
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 47 4e-06
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 41 3e-04
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 38 0.002
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 38 0.002
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 36 0.007
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 33 0.067
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 32 0.12
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.83
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.5
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 27 2.5
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 5.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 7.7
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 134 bits (324), Expect = 1e-32
Identities = 66/110 (60%), Positives = 83/110 (75%)
Frame = +3
Query: 378 GPRKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGF 557
G KITKDGVTVA+ V LKDKF+N+GA+LVQ+VA+ TNE AGDGTTTATVL RAI E
Sbjct: 76 GSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETV 135
Query: 558 EKISKGANPIEIXXGVMLAVXAVKEKLKGMXKXVTTPEKIAQVATISANG 707
++ G NP+++ G+ LAV V E L+ + +TT E+I+QVATISANG
Sbjct: 136 RNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANG 185
Score = 73.3 bits (172), Expect = 4e-14
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +2
Query: 185 RLP-RVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVI 361
RLP R+ + + + R YAKD++FG D RA +L GVD LA AV+VT+GPKGRNV+
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 362 LEQSWGSPK 388
++Q +GSPK
Sbjct: 71 IDQPFGSPK 79
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 48.4 bits (110), Expect = 1e-06
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 378 GPRKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGF 557
G +T DG T+ +E++ + AKL+ ++ + ++E GDGTT VLA A+ ++
Sbjct: 68 GEITVTNDGATILDQMEVEHQI----AKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAE 123
Query: 558 EKISKGANPIEIXXGVMLAVXAVKEKLKGMXKXVT-TPE 671
I KG +PI I G A + L + V +PE
Sbjct: 124 ALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPE 162
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 46.8 bits (106), Expect = 4e-06
Identities = 25/98 (25%), Positives = 48/98 (48%)
Frame = +3
Query: 348 VETLFWNNLGGPRKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATV 527
++ + +N G +T DG T+ K + L N AK++ N++ ++E GDGTT+ V
Sbjct: 45 MDKILQSNSSGDIVVTNDGATILKSIAL----DNAAAKVLVNISKVQDDEVGDGTTSVCV 100
Query: 528 LARAIAKEGFEKISKGANPIEIXXGVMLAVXAVKEKLK 641
A + ++ ++ +P I G +A + L+
Sbjct: 101 FAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALR 138
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 269 GADVRALMLQGVDILADAVAVTMGPKGRNVILEQS 373
G + R G + D V T+GPKG + IL+ +
Sbjct: 18 GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSN 52
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 40.7 bits (91), Expect = 3e-04
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 378 GPRKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGF 557
G +T DG T+ + L D G LV+ +A ++E GDGTT+ ++A + +
Sbjct: 55 GDVTVTNDGATI---LSLLDVEHPAGKVLVE-LAQQQDKEVGDGTTSVVIIAAELLRRAN 110
Query: 558 EKISKGANPIEIXXGVMLAV-XAVK 629
E + +P I G LA+ AVK
Sbjct: 111 ELVKNKIHPTTIITGYRLAIREAVK 135
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +3
Query: 390 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 569
+T DG T+ K + + AK++ +++ + EAGDGTT+ +LA ++ + +
Sbjct: 57 LTNDGATILKHLSVLHP----AAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLK 112
Query: 570 KGANPIEIXXGVMLAVXAVKEKLK--GMXKXVTTPEKIAQVATISAN 704
KG +P I A + +K + ++ E + + AT S N
Sbjct: 113 KGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLN 159
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 378 GPRKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGF 557
G K+TKDG + +++ QN A + A ++ GDGTT+ +L + K+
Sbjct: 50 GAIKLTKDGKVLLTEMQI----QNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAE 105
Query: 558 EKISKGANPIEIXXGVMLA 614
I +G +P I G LA
Sbjct: 106 LYIREGLHPSLISDGFNLA 124
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +3
Query: 390 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 569
I+ DG T+ K +++ AK + ++A + E GDGTT+ V A + +E +
Sbjct: 62 ISNDGATIMKLLDIVHP----AAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVE 117
Query: 570 KGANPIEIXXGVMLAVXAVKEKLK 641
G + I G A K+K
Sbjct: 118 DGVSSHLIIRGYRKAAQLAVNKIK 141
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 32.7 bits (71), Expect = 0.067
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 390 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 569
+T DG + + +E+ AK + +A +EE GDGTT+ +LA I +
Sbjct: 57 LTNDGHAILREIEVAHP----AAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLD 112
Query: 570 KGANPI 587
+ +P+
Sbjct: 113 RKIHPV 118
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = +3
Query: 390 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 569
+T D T+ + +E+ AKLV + E GD V + + I
Sbjct: 64 LTNDAATIIRELEVIHP----AAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIR 119
Query: 570 KGANPIEIXXGVMLAVXAVKEKLK 641
G P+EI G +A+ E L+
Sbjct: 120 MGLTPLEIAKGYEMALSHTMEVLE 143
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 0.83
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 442 NLSLSSTPLATVTPSFVIFRGPPRLFQNNVSTFWTH 335
N STP T+ PS + PP F+NN S H
Sbjct: 118 NTQTYSTPYTTMNPSNEMHPYPPATFENNYSVLPDH 153
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 779 FHXDNPSLPTFFIASAXSLPIAVSPVSRYGSY 684
F DNPS+ F+ +LP+ VSPV Y +
Sbjct: 262 FLYDNPSI---FVIGILNLPLKVSPVELYNEF 290
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 188 LPRVVRQTVSLHKSYQLSRFYAKDVRFGADVRALMLQGVDILADAV 325
+P V++ + ++ Y+L+ F+ R+ V LQGV + AD V
Sbjct: 140 VPSVLKAPIFIY--YRLTNFFQNHRRYAKSVDEKQLQGVALTADEV 183
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 254 KDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKDHKRRR 406
KD+ G DV + ++GV + A +GP R+V S S K KRR+
Sbjct: 476 KDLITGIDVDDIEIRGVPVSA-----AIGPIKRSVEANSSNSSKKTRKRRK 521
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 390 ITKDGVTVAK-GVELKDKFQNIGAKLV 467
+T G T G+ELKD+F+ +G K++
Sbjct: 555 VTFGGQTALNVGIELKDEFEQLGVKVL 581
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,273
Number of Sequences: 5004
Number of extensions: 58569
Number of successful extensions: 169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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