Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K20
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    56   5e-09
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    29   0.86 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.6  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +3

Query: 99  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 191
           M+N+AG+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHAS 31



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 196 QLVIADVDPATGRAADTSKM-YVVCGAIRRMGESDDCIVRLTKKDGIL 336
           Q+ +  VD A GR     K  Y + G +R  GESDDCI RLT +DG+L
Sbjct: 33  QINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDCINRLTTQDGLL 79


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 140 RAVQVNEFTGVVLHFICTSTLVHGIDRCERK 48
           RAV + + TG VLHF  T T VH     ER+
Sbjct: 808 RAVPLRDCTGSVLHFFGTMTDVHDQKLAERE 838


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 226 WRGLRQQSLAVXEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVRPHWYTELTDAKES 47
           WR L     +     ++AW   L + +F  + +S N+   + I +  P+ +T + DAK  
Sbjct: 242 WRLLCLLPASFASQSTIAWQSHLNSYYFSLRTRSLNNVLFWVIQFFVPYLFTLILDAKAL 301

Query: 46  K 44
           K
Sbjct: 302 K 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,840
Number of Sequences: 5004
Number of extensions: 33521
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)