Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K17
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.45 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.3  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   9.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 735 PPPPPXXGGGGXXPPP 688
           PPPPP   G G  PPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 735 PPPPPXXGGGGXXPPP 688
           PPPPP  G  G  PPP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 735 PPPPPXXGGGGXXPPPXXXXGXG 667
           PPP P  GG    PPP    G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 735 PPPPPXXGGGGXXPPP 688
           PPPPP    G   PPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 669 PPXPXXXXXGXPPPPP 716
           PP P     G PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 669 PPXPXXXXXGXPPPPPXGGGXG 734
           PP P       PPPPP   G G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG 774



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 672 PXPXXXXXGXPPPPPXGGGXG 734
           P P     G PPPPP  G  G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 735 PPPPPXXGGGGXXPPP 688
           PPPP   G G   PPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 689 GGGXXPPPPXXGGGGG 736
           GGG   PPP  GG GG
Sbjct: 194 GGGSGGPPPGPGGFGG 209


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 280 FPGGGFPXXPG*XPGWGLG 224
           FPGGGFP       G+G+G
Sbjct: 446 FPGGGFPGGSYNSQGFGMG 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,869
Number of Sequences: 5004
Number of extensions: 18808
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)