Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K15
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   1.9  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   2.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   7.7  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 700  NFHLHLVPVESRARSPDAAVRDTM 629
            NFH  LV + SRAR PD   R T+
Sbjct: 1056 NFHTQLVSLISRARDPDYYSRPTI 1079


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -3

Query: 554 IVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSN 399
           ++E       ++ H+  F +D  +++ S+ F  ++    + TG+SI+P   N
Sbjct: 240 VIEFMFWAGMVMLHISRFAED-LIIYSSSEFGFVTLSDAYSTGSSIMPQKKN 290


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 650 CSRERHNVINCRCECTQNVETAQDDNSQEK 561
           C    +  INCRC  ++  E+A  D S  K
Sbjct: 29  CVSNENGCINCRCSPSEPHESANVDESVNK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,023
Number of Sequences: 5004
Number of extensions: 62893
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)