Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K13
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    58   2e-09
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   2.6  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    27   3.4  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   4.5  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   4.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   7.9  

>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
 Frame = +1

Query: 343 GELANVKAAAKEQTIFMLSTIATTSIEEVANAAPDATKWFQLY-IYND-REVTKNLVLRA 516
           GE  +  AA +E   +++ST + TS E++  A+    +W+QLY   ND +++T +L+ RA
Sbjct: 118 GESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRA 177

Query: 517 EKHGFTAIALTVDTPLFGLRRADIRN 594
           +K G   + +T+DT + G R +D+ N
Sbjct: 178 KKTGCRVLIVTLDTFILGWRPSDMDN 203


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 447 IWRCVCYFFYRSCGDGA 397
           +W+ +C+F Y S GD A
Sbjct: 338 VWQSICFFIYASVGDRA 354


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 447 IWRCVCYFFYRSCGDGA-QHKD 385
           IW+ +C+F Y + GD A  HK+
Sbjct: 306 IWQYICFFIYAAVGDRALYHKN 327


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 526 GFTAIALTVDTPLFGLRRADIRNXLHCPDT*DYQFR 633
           GF+ ++  ++TPLF L   D+ N     +  DY+ R
Sbjct: 95  GFSQVSSDLNTPLFPLNNTDMENDPFIVNGDDYRSR 130


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 204 FQRLRISPKCLVGVNNCDLRTTVLGNEI 287
           F RL+I  K +V V +CDL   +LGN I
Sbjct: 54  FIRLKIY-KYVVLVTSCDLHAAILGNNI 80


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +3

Query: 60  QRFLGIMEKYISVKDLEEAALKRLPKSVRDYYSSGATEEQTLGENKNAFQRLRISPKCLV 239
           Q+F  I E  +S + + E   + L ++V  +  S A  E TLG        +R  PK   
Sbjct: 229 QQFWYIFEPSLSER-ITEITDQILSENVPSFIDSMALSEFTLGTKSPRMGFIRSYPKTEE 287

Query: 240 GVNNCDLRTTVLGNEIS 290
                DLR     N+IS
Sbjct: 288 DTVMMDLRLAFSPNDIS 304


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 444 WRCVCYFFYRSCGDGAQHKDS-LFLSSSFNISK 349
           WR + YFF  S   G+ H  +  FLS  +N+++
Sbjct: 225 WRALAYFFMSSFLAGSLHPTAGHFLSEHYNMTR 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,381
Number of Sequences: 5004
Number of extensions: 46940
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)