Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K13
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-5|AAB65955.2|  320|Caenorhabditis elegans Hypothetical ...    87   2e-17
U97009-4|AAC69035.1|  336|Caenorhabditis elegans Seven tm recept...    30   2.4  

>AF016448-5|AAB65955.2|  320|Caenorhabditis elegans Hypothetical
           protein F41E6.5 protein.
          Length = 320

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
 Frame = +1

Query: 334 TLXGELANVKAAAKEQTIFMLSTIATTSIEEVANAAP--DATKWFQLYIYNDREVTKNLV 507
           TL GEL+ V+ AA   +I + S+ +TTS+E++   A    AT WFQLY+Y DR +T++L+
Sbjct: 89  TLDGELSTVRGAAASNSIMICSSWSTTSVEDIGKEAKIVGATIWFQLYVYKDRAITESLI 148

Query: 508 LRAEKHGFTAIALTVDTPLFGLRRADIRNXLHCP 609
            RAE  G  A+ LTVDTP+ G R  D  N    P
Sbjct: 149 HRAEAAGVEALVLTVDTPVLGRRLKDTYNKFSLP 182



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +3

Query: 90  ISVKDLEEAALKRLPKSVRDYYSSGATEEQTLGENKNAFQRLRISPKCLVGVNNCDLRTT 269
           +++ D  + + K L K  RDYY SGA +E++L  N +AF  L I P+CL  V N D    
Sbjct: 7   LTLDDYRKFSEKNLVKLARDYYESGAEQEESLRRNISAFNNLLIRPRCLRSVENIDTSID 66

Query: 270 VL-GNEISMPIGISATAMQRMA 332
            L G +   P+GI+ TA Q+MA
Sbjct: 67  WLNGKKSVFPVGIAPTAFQKMA 88


>U97009-4|AAC69035.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 32 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 501 IFCYFSIIINVKLKPFSSIWRCVCYFFY 418
           +F Y+++  + KLK F++ WRCV +F Y
Sbjct: 113 VFRYWTLFNDEKLKYFNT-WRCVVWFLY 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,125
Number of Sequences: 27780
Number of extensions: 264744
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)