Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_K08
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 231 7e-62
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 109 5e-25
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 61 2e-10
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 35 0.018
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 30 0.38
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.88
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 2.7
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 27 4.7
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 26 8.2
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 231 bits (566), Expect = 7e-62
Identities = 104/231 (45%), Positives = 145/231 (62%)
Frame = +3
Query: 153 LLLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDIIEFITQ 332
LL KH YL G D+ + + E+L +S IYWS + L+ + ++ KE I+ F+
Sbjct: 4 LLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSFLLS 63
Query: 333 CQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYGD 512
C +ESGG + GHD HI T+ AVQVLAM D L VD + + YI+ LQ EDGS GD
Sbjct: 64 CL-TESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122
Query: 513 KWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYC 692
+WGEID RF + + CL++L +LD ++ N V++++ C NFDGGFG PG+ESH +++
Sbjct: 123 RWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFT 182
Query: 693 CVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLPXLCYSXXXMS 845
CV L I ++D + + L WW+ ERQ+ GGLNGRPEKLP CY +S
Sbjct: 183 CVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLS 233
Score = 52.8 bits (121), Expect = 6e-08
Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Frame = +3
Query: 249 IYWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMY 428
+Y + + ++G+ + K ++++ +C + + GG G + H + V L +
Sbjct: 132 LYSGINCLAILGKLDYLNKNTAVDWLMKCYNFD-GGFGLCPGAESHGAMVFTCVAALKIL 190
Query: 429 DRLDAVDIEGIVRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTV 608
++LD +D E + +I Q + G G D+ + + + L+++ +LD ID N+ +
Sbjct: 191 NKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDWIDRNQLI 250
Query: 609 EFVLSCMNFD-GGFGSK 656
+F+L + D GGF +
Sbjct: 251 DFLLGTQDADSGGFADR 267
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 109 bits (262), Expect = 5e-25
Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 6/245 (2%)
Frame = +3
Query: 114 TQAVVLKAARPKTLLLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELMGQSS 293
T + L ++ LQKH YL L+ + + + R +YW L+++ ++G+
Sbjct: 16 TAVLPLLNGESQSFNLQKHLKYLTKM-LDPLPSPFTVLDASRAWMVYWELSSLAILGKLD 74
Query: 294 RMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDA---VDIEGIV 464
E I + Q + SGG G D H+L T +++ + + D DA ++ + +
Sbjct: 75 SSVCERAISSVRQLK-GPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLY 133
Query: 465 RYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAID--INKTVEFVLSCMNFD 638
++ SL+ DGSF + GE D R + AV C+S L + D T++++ C ++
Sbjct: 134 DWLFSLKNPDGSFRVNNEGESDARSVYAAV-CVSSLVGISMDDPLFEGTLQWLCKCQTYE 192
Query: 639 GGFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCERQLPS-GGLNGRPEKLP 815
GG P +E+H G +C + +++ +D L+ +L+ WL +RQ P+ G +GR KL
Sbjct: 193 GGLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLV 252
Query: 816 XLCYS 830
CYS
Sbjct: 253 DGCYS 257
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 60.9 bits (141), Expect = 2e-10
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 21/181 (11%)
Frame = +3
Query: 366 SIGHDPHILYTLSAVQ-VLAMYDRLDAVDIEGIVRYIVSLQQEDGSFYG---DKWGEIDT 533
S +P + T+ ++ +L + D L +D + I ++ + G F + D
Sbjct: 90 SFEQEPQLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDM 149
Query: 534 RFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGSESHAGLIYCCVGTLSI 713
R + A SLL D +++++ SC ++GGF P E+HAG +C + + S+
Sbjct: 150 RQLYMATTIASLLD-FSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSL 208
Query: 714 CKR----------------MDAL-HADELAWWLCERQLPSGGLNGRPEKLPXLCYSXXXM 842
+ MD + + L WL RQL SGGLNGR K CY+ +
Sbjct: 209 ILKMIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVL 268
Query: 843 S 845
S
Sbjct: 269 S 269
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 34.7 bits (76), Expect = 0.018
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Frame = +3
Query: 351 GGISASIGHDPHILYTLSAVQVLAMYD---RLDAVD--IEGIVRYIVSLQQEDGSFYGDK 515
G I + + A++ YD R D ++ IE + Y+V +Q+ DGS+YG
Sbjct: 517 GNIMVEYSYPECTTSVILALRAFTKYDPGYRRDEIENTIENALEYVVKMQRPDGSWYG-S 575
Query: 516 WGEIDTRFSFCAVMCLSLLQRL--DAIDINKTVEFVLSCMNFDGGF 647
W T + A L+ R + K EF+LS DGG+
Sbjct: 576 WAICFTYAAMFATGSLASAGRYYENCPVQKKACEFLLSKQRPDGGW 621
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 645 FGSKPGSESHAGLIYCCVGTLSICKRMDALH 737
F S+P S SHA YC S+C + LH
Sbjct: 458 FRSRPDSTSHASCTYCVARLRSVCNFVAFLH 488
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 168 HSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELMGQSSRMPKE-DIIEFITQCQ 338
HS+Y A +GL+ Y M Y+ SG W A P + F+TQ Q
Sbjct: 229 HSNYYAGFGLSYYLYLSSMKAYINSSGCLWYEDATSFWDIVKHRPSSPEEKPFLTQFQ 286
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 609 EFVLSCMNFDGGFGSKPGSESHAGLIY 689
+F ++C++ +G + P +ES G+IY
Sbjct: 471 KFEMACLDHEGALYASPATESSPGVIY 497
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 681 DQHGFPIQVWNQIHHQSSCN*AQTPQSC*CRW 586
D H F + WN + HQ+ + S CRW
Sbjct: 93 DDHRFEVD-WNNLRHQACSEIRASSMSGECRW 123
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 156 LLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELMGQSSRMPKEDII 317
+L + S LA+ G N D C TE +S + L + + + ++ EDI+
Sbjct: 83 VLSRLSGILAARGFNIDSLVVCATEVENLSRMTIVLRGADEVVEQAKRQIEDIV 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,258
Number of Sequences: 5004
Number of extensions: 68333
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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