Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_K08
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical p... 253 1e-67
U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical p... 253 1e-67
Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 81 1e-15
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 28 7.7
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 28 7.7
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 28 7.7
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 7.7
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 7.7
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 7.7
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 7.7
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 28 7.7
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 28 7.7
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 7.7
>U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical
protein B0280.1b protein.
Length = 325
Score = 253 bits (619), Expect = 1e-67
Identities = 115/243 (47%), Positives = 160/243 (65%)
Frame = +3
Query: 102 MSFXTQAVVLKAARPKTLLLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELM 281
+ F + V L P LL H++++ Y NK+ Y Y M E+LR+SGIYW + AM+L
Sbjct: 7 LDFARKDVDLPQNSPNELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLS 66
Query: 282 GQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGI 461
Q RM E+I+ ++ C++++ GG + GHD H+L+TL AVQ L +++ ++ D + I
Sbjct: 67 KQLERMSTEEIVNYVLGCRNTD-GGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTI 125
Query: 462 VRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDG 641
Y+ LQQEDGSF GD GE+DTRF+ C++ LL RL ++I+ V F++ C N DG
Sbjct: 126 SEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDG 185
Query: 642 GFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLPXL 821
GFG++PGSESH+G IYCCVG L+I R+D + D A WL RQ SGGLNGRPEKLP +
Sbjct: 186 GFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245
Query: 822 CYS 830
CYS
Sbjct: 246 CYS 248
Score = 54.8 bits (126), Expect = 8e-08
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
Frame = +3
Query: 306 EDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQ 485
+ I E++ Q E G + + +TL ++ + RL ++I+ VR+++
Sbjct: 123 DTISEYVKGLQQ-EDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCY 181
Query: 486 QEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGS 665
DG F E + +C V L++ RLD ID ++T E++ GG +P
Sbjct: 182 NTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEK 241
Query: 666 ESHAGLIYCCVGTLSICKRMDALHADELAWWL--CERQLPSGGLNGRP 803
+ + +L+I R++ + +D + ++ C+ +GG RP
Sbjct: 242 LPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDD-ETGGFADRP 288
Score = 31.9 bits (69), Expect = 0.62
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 252 YWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGIS 362
+W L ++ ++G+ + + + + +FI CQD E+GG +
Sbjct: 249 WWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFA 285
>U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical
protein B0280.1a protein.
Length = 335
Score = 253 bits (619), Expect = 1e-67
Identities = 115/243 (47%), Positives = 160/243 (65%)
Frame = +3
Query: 102 MSFXTQAVVLKAARPKTLLLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELM 281
+ F + V L P LL H++++ Y NK+ Y Y M E+LR+SGIYW + AM+L
Sbjct: 7 LDFARKDVDLPQNSPNELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLS 66
Query: 282 GQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGI 461
Q RM E+I+ ++ C++++ GG + GHD H+L+TL AVQ L +++ ++ D + I
Sbjct: 67 KQLERMSTEEIVNYVLGCRNTD-GGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTI 125
Query: 462 VRYIVSLQQEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDG 641
Y+ LQQEDGSF GD GE+DTRF+ C++ LL RL ++I+ V F++ C N DG
Sbjct: 126 SEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDG 185
Query: 642 GFGSKPGSESHAGLIYCCVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLPXL 821
GFG++PGSESH+G IYCCVG L+I R+D + D A WL RQ SGGLNGRPEKLP +
Sbjct: 186 GFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245
Query: 822 CYS 830
CYS
Sbjct: 246 CYS 248
Score = 54.8 bits (126), Expect = 8e-08
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
Frame = +3
Query: 306 EDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDAVDIEGIVRYIVSLQ 485
+ I E++ Q E G + + +TL ++ + RL ++I+ VR+++
Sbjct: 123 DTISEYVKGLQQ-EDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCY 181
Query: 486 QEDGSFYGDKWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMNFDGGFGSKPGS 665
DG F E + +C V L++ RLD ID ++T E++ GG +P
Sbjct: 182 NTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEK 241
Query: 666 ESHAGLIYCCVGTLSICKRMDALHADELAWWL--CERQLPSGGLNGRP 803
+ + +L+I R++ + +D + ++ C+ +GG RP
Sbjct: 242 LPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDD-ETGGFADRP 288
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 252 YWSLTAMELMGQSSRMPKEDIIEFITQCQDSESGGISASIGHDPHILYTLSAVQVLAMY- 428
+W L ++ ++G+ + + + + +FI CQD E+GG + G +T+ + L+++
Sbjct: 249 WWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGIAALSLFG 308
Query: 429 -DRLDAVD 449
D L++VD
Sbjct: 309 DDTLESVD 316
>Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.6 protein.
Length = 401
Score = 116 bits (280), Expect = 2e-26
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 8/235 (3%)
Frame = +3
Query: 150 TLLLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELMGQSSRMPK---EDIIE 320
T+ QKH+ YL Y L Y + R YW + A++++ + +P E+II
Sbjct: 60 TIFRQKHASYLLRY-LKNCPSSYATLDASRSWMCYWGVNALKIL--DAEIPNDVIENIIV 116
Query: 321 FITQCQDSESGGISASIGHDPHILYTLSAVQVLAMYDRLDA---VDIEGIVRYIVSLQQE 491
F+ C+ E GG G H+ T +AV L + +A ++ + ++ + E
Sbjct: 117 FLKSCEHPE-GGYGGGPGQLAHLAPTYAAVMCLVSLQKEEALRSINRVTLFNFLKKCKHE 175
Query: 492 DGSFYGDKWGEIDTRFSFCAVMCLSLLQR-LDAIDINKTVEFVLSCMNFDGGFGSKPGSE 668
G FY + GEID R ++CA+ ++ +D I N E+++SC +F+GGFG +P +E
Sbjct: 176 SGGFYMHEGGEIDMRSAYCALATCEIVGLPMDEIS-NGVAEWIISCQSFEGGFGGEPYTE 234
Query: 669 SHAGLIYCCVGTLSICKRMDALHADELAWWLCERQLP-SGGLNGRPEKLPXLCYS 830
+H G +C V +L + R + L W RQ+ GG GR KL CYS
Sbjct: 235 AHGGYTFCAVASLVLLNRFRLADMEGLLRWATRRQMRFEGGFQGRTNKLVDGCYS 289
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 81.0 bits (191), Expect = 1e-15
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 22/250 (8%)
Frame = +3
Query: 147 KTLLLQKHSDYLASYGLNKDDYXYCMTEYLRMSGIYWSLTAMELMGQSSRM----PKEDI 314
+T +KH +L + LN Y E R + +++++++L+G+ + ++
Sbjct: 25 QTFEFKKHIGFLIRH-LNVFPQPYNTLETSRNTIFLFAISSLDLLGELDNLLTPERRQAY 83
Query: 315 IEFITQCQDSESG--GISAS-----IGHDP-HILYTLSAVQVLAMY-DRLDAVDIEGIVR 467
I++I Q + G S G+D ++ T SA+ LA+ D L VD + I++
Sbjct: 84 IDWIYGLQFTNGNVCGFRGSHSCENSGYDEANLAQTYSALLSLAILGDDLKKVDRKAILK 143
Query: 468 YIVSLQQEDGSFYGDKWG-EIDTRFSFCAVMCLSLLQ--RLDAIDINKTVEFVLSCMNFD 638
+ + Q+++G F+ G E D RF FCAV +L + ID K F+ +N D
Sbjct: 144 TVKTAQRDNGCFWSQGVGSESDMRFVFCAVAISHILDGDKEQTIDWTKLAGFLRQSLNID 203
Query: 639 GGFGSKPGSESHAGLIYCCVGTLSICKRM---DAL---HADELAWWLCERQLPSGGLNGR 800
GG G PG ESH G +C + +L++ R+ + L D L W ++Q G +GR
Sbjct: 204 GGIGQAPGDESHGGSTFCAIASLALSNRLWTEEVLTRRDIDRLIRWAIQKQ--DIGFHGR 261
Query: 801 PEKLPXLCYS 830
K CY+
Sbjct: 262 AHKPDDSCYA 271
Score = 37.1 bits (82), Expect = 0.017
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Frame = +3
Query: 351 GGISASIGHDPHILYTLSAVQVLAMYDRL--DAV----DIEGIVRYIVSLQQEDGSFYGD 512
GGI + G + H T A+ LA+ +RL + V DI+ ++R+ ++Q++D F+G
Sbjct: 204 GGIGQAPGDESHGGSTFCAIASLALSNRLWTEEVLTRRDIDRLIRW--AIQKQDIGFHGR 261
Query: 513 KWGEIDTRFSFCAVMCLSLLQRLDAIDINKTVEFVLSCMN-FDGGFGS--KPGSESHAGL 683
D+ ++F L +L + EF++ C + GGF +PG S
Sbjct: 262 AHKPDDSCYAFWIGATLKILNAYHLVSKQHLREFLMICQHPHIGGFCKYPEPGGYSDILH 321
Query: 684 IYCCVGTLSI 713
Y + LS+
Sbjct: 322 TYFSIAALSL 331
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 640 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 530
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
protein C47D12.1b protein.
Length = 4061
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 640 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 530
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
protein C47D12.1a protein.
Length = 4064
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 640 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 530
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 100 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 133
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 140 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 173
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 146 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 179
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 146 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 179
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 148 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 181
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 640 PSKFMQLSTNSTVLLMSMASNRCKSDRHITAQKENLV 530
P+ Q+ S LL S+A + CK D H T Q +L+
Sbjct: 420 PNNSSQVQIMSARLLNSLAESLCKMDSHDTFQTRDLL 456
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 100 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 133
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 TIPSISTASNLSYIASTCTALN-VYSMCGSCPMLAEIPP 350
T+P +S+ S++ ++S+C++++ VYS C LA +PP
Sbjct: 158 TLPFVSSGSSICSVSSSCSSVSTVYSNC-----LAMLPP 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,920,941
Number of Sequences: 27780
Number of extensions: 392273
Number of successful extensions: 1108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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