Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K08
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    28   0.13 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    28   0.13 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.92 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.92 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 687 YCCVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLP 815
           Y C G + +    +  H  EL W   ++ L   G+  RPE+LP
Sbjct: 785 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMIVGI--RPERLP 825


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 687 YCCVGTLSICKRMDALHADELAWWLCERQLPSGGLNGRPEKLP 815
           Y C G + +    +  H  EL W   ++ L   G+  RPE+LP
Sbjct: 823 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMIVGI--RPERLP 863


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 361 EIPPLSLSWHCVMNSIISSLGIL 293
           + PPL+  WH ++  +I  LG +
Sbjct: 43  QYPPLNPMWHGILGFVIGMLGFV 65


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 361 EIPPLSLSWHCVMNSIISSLGIL 293
           + PPL+  WH ++  +I  LG +
Sbjct: 9   QYPPLNPMWHGILGFVIGMLGFV 31


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 691 AVWVHCRYASAWTPYTQTSWRGGYVN 768
           A+ +   Y  +WTPY   S  G + N
Sbjct: 276 AITICFLYVLSWTPYGVMSMIGAFGN 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,935
Number of Sequences: 438
Number of extensions: 4947
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)