Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_K04
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.13
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 31 0.22
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 31 0.29
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 30 0.51
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.89
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 28 1.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.3
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 8.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 8.3
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 512 IRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 691
+ SE+T + T E +E+ RE I LRS L D + VE + E + E+
Sbjct: 974 LASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKEL 1033
Query: 692 YKAIED 709
K +ED
Sbjct: 1034 AKQLED 1039
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 539 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEK--TRLTLEQQTAEVYKAIEDK 712
I+A + L A+ E +E+ E +NE R+K+ E +K + T + + + +E+K
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEK 1651
Query: 713 MTTAADKRDENLKKMI 760
+ + D LKK++
Sbjct: 1652 LKENSANFDVKLKKVV 1667
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 685 RGLLFQGQPGLLNTL-KMILETGAQLVDVGLAFFLVGLHLGVERLLGSDDEVIRLLAADA 509
RG+LF G PG TL +L + ++FFL + + +G + +RLL +A
Sbjct: 407 RGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEA 466
Query: 508 RR 503
RR
Sbjct: 467 RR 468
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/71 (19%), Positives = 36/71 (50%)
Frame = +2
Query: 527 TNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 706
T N I++ + + + HEE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKKT 144
Query: 707 DKMTTAADKRD 739
++K+D
Sbjct: 145 ALEIDLSEKKD 155
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 29.9 bits (64), Expect = 0.51
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -2
Query: 700 GLVHFRGLLFQGQPGLLNTLKMILETGAQLVDVGLAFFLVGLHLGVERLLGSDDEVIRLL 521
G+ H +G+L G PG TL I ++++ + G + + + +G +E +R L
Sbjct: 300 GINHVKGILLYGPPGTGKTL--IARQIGKMLNAREPKIVNGPEI-LNKYVGQSEENVRKL 356
Query: 520 AADA-RRFLDXGHLLSNGGHLTSF 452
ADA R + D G +G H+ F
Sbjct: 357 FADAEREYRDRGE--ESGLHIIIF 378
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.1 bits (62), Expect = 0.89
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +2
Query: 575 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKK 754
E +EE + + E +++K+ +KTR + EQQT + IE+++ +K ++ LKK
Sbjct: 402 EKNEEVKS--LREKAAKVKNDCTSEKKTRQSYEQQTVK----IEEQLKFLLNK-EKKLKK 454
Query: 755 MIEA 766
IEA
Sbjct: 455 SIEA 458
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +2
Query: 545 ATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIEDKMT 718
A +E + ++E +EA +NE R L+ LEG ++ L++ Q + YK E + T
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64
Query: 719 TAADKR--DENLKKMIEASART*GTSSQGP 802
+ D+ ++ E + T+S+ P
Sbjct: 65 QEETETNLDDEYHRLGEREPKVLVTTSREP 94
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 554 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE--DKMTTAA 727
E L K+++ ++++ INEL R+K + V + T+++ ++ E +++ A
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAF 589
Query: 728 DKRDENLKKMIEA 766
+D +L++ E+
Sbjct: 590 QYKDNDLRRFHES 602
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 521 EQTNNFIVATKEA-LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 697
+Q VA ++A +E K E + + + SR+K + +E TR L +Q ++ +
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTR--LYKQLQDIEE 517
Query: 698 AIEDKMTTAADKRDENLKKMIE 763
E+K+ + E++ ++ E
Sbjct: 518 DYENKLMRMEQQWREDVDQLQE 539
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 211 DAIQLFRSLCRLKVEAMEVETKSTEIRCQXM 303
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 605 INELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIE 763
+N+L + L+D L G+E +RLT + + + A D + L++ ++
Sbjct: 494 VNDLIAELQDELRGIE-SRLTSVLSECNMLRETASEEKNAFDAESDKLERELQ 545
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 416 SLGSLRRKESFRASQRDRGTGTPTGSASITSYARPPF 306
SL +++ +SF + G G+ TG+ S+ S P F
Sbjct: 43 SLKNVKCIDSFHGNNEILGAGSSTGNISLLSVKHPEF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,237
Number of Sequences: 5004
Number of extensions: 36818
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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