Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K04
         (893 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    25   2.3  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   3.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   3.1  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   5.4  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 478 SEDGQXRGSVSHPQRADE*--LHRRYQGGARRQDGDPRGKTRGLHQR 612
           ++ G  +  V+ PQ++ +    HR++Q    +Q+G  + +  G+HQ+
Sbjct: 248 NQRGNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQ 294


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +2

Query: 587 EKREAYINELRSRLKDHLE-GVEKTRLTLEQ--QTAEVYKAIEDKMTTAADKRDENLKKM 757
           EK++A +NEL + +++ +E  +EK R   E   +  +V + IE         R   L K 
Sbjct: 186 EKKDAKLNELYAVIREEIEPKLEKLRKEREHYIEFQKVCRDIEYLTRLYVSYRYLQLCKG 245

Query: 758 IEASART 778
           +E S RT
Sbjct: 246 VEESERT 252


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 506 SRIRSEQTNNFIVATKEAL-DAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 682
           S+ R  +  + +   +E L DAK++ HE+ R     E+    K  + GV    + + Q T
Sbjct: 476 SKERIHELQSELDNVREQLGDAKIDKHEDARRKKKQEVVELFKLEVPGVYDRMINMCQPT 535

Query: 683 AEVYKAIEDKM 715
            + Y     K+
Sbjct: 536 HKRYNVAVTKV 546


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 589 KTRGLHQRAA-LPSQGSS*GC*EDQVDPGTADRGSVQ 696
           +TR + +R   LP +G+  G       PGT DR S+Q
Sbjct: 2   ETRSMRKRTTRLPEEGAPTGA-----GPGTGDRASIQ 33


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,842
Number of Sequences: 2352
Number of extensions: 10390
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)