Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K03
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    31   0.16 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    29   0.84 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   2.6  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    26   7.8  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 157 VLPNVNSTI-YHDVPAIINLVDYV----NVGAYDYYTPTRNNKEADYTAPIYTPQNRN 315
           ++  + ST+ YHD+   IN+V  V     +G Y+YY  T+ NK+       Y   N N
Sbjct: 316 IITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITKGNKKEAEKEVEYIVLNEN 373


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 244 YYTPTRNNKEADYTAPIYTPQNRNPLQNADAA 339
           Y TPT       Y  P YTP  RNP Q+   A
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVA 621


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 511 SYPEVCGKLINPNQQKGMRPHLRKVTDPSKRF 606
           +Y  VCGK  +P+Q+K +R   R++  P ++F
Sbjct: 417 AYAAVCGKTRSPHQKKPLRVEFRQLR-PMQQF 447


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 173 LTLGKTVTPSCI---LGLWIRACFNSRTKGSETLHGAQDSFSSTG 48
           LT G  + P      +  +++     RTKG+ETL G + + S +G
Sbjct: 185 LTGGSNIRPEATGYGVVYYVKHMIEHRTKGAETLKGKRVAISGSG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,663
Number of Sequences: 5004
Number of extensions: 82127
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)