Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_K01
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 413 QIFYGLFTNSNVVILAQVKLGFYCLFG*SRKTVKKL 306
           QI  G+ + + V  +  +K+  YCLFG S  T  ++
Sbjct: 516 QIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRM 551


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 498 EINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELAN 611
           E+NV   SL + LK+     +SG+  Q  Q    EL++
Sbjct: 92  EVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSH 129


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 265 DLTKRNVWHLNSLRSFLTVFLLYPN 339
           +LTK + W L+ +++ +  +L+  N
Sbjct: 272 ELTKIDKWFLHKMKNIIDYYLVLEN 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,076
Number of Sequences: 438
Number of extensions: 3787
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)