Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J24
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   2.0  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   3.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   3.5  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   4.6  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   6.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   8.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   8.0  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 572 FMANVSPRFFINGSGSVCNLLNNSSPYTLFIS 477
           F +NV+PR FI    SVC ++ N  PY+  +S
Sbjct: 394 FPSNVNPRGFICAEKSVCRVVEN--PYSNTVS 423


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 385 SREMRVRHDPQYFKQ----NCYTNGKYHTDALNDSDMKSVYGEE 504
           S+E++   DPQYF +      Y NG  + ++LN SD   +  +E
Sbjct: 435 SKELKAPPDPQYFTEKTGATTYVNG--NDESLNVSDFPQIVEQE 476


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 297 PHRPSPDIRKYFNSVSCAT*KKFLENEFFEP*NARQTRSAVFQTKLLYQ 443
           PH PS D+  Y NS  C T    +E +F     A Q  +++  T+L  Q
Sbjct: 786 PHCPSVDL--YINSPQCGTLHSGVEYKFNVSAYACQPSTSISNTRLAIQ 832


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 371 FEKFLLRCTRYTIKVFSYIRRRSVRVSATL 282
           + KFL + T+ T++V+S  R  SVR SA +
Sbjct: 311 YRKFLKQFTQATVEVWSSTRDDSVRFSAVV 340


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 463 ALNDSDMKSVYGEELFNKLHT 525
           AL+DSD++S Y EEL  K  T
Sbjct: 299 ALDDSDLESAYNEELEMKKDT 319


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 431 FCLKYCGSCLTRISRLKKFIFEKFLLRCTRYTIK 330
           +C ++C   +  I  +   IFE F + C+   I+
Sbjct: 764 YCFEFCDGQIPNIQNINMSIFEAFPIACSLQQIE 797


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 289 ADTLTDLRLI*ENTLIVYRVQRKRNFSKMNFLSR-EMRVRHDPQYFKQNCYTNGKYHTDA 465
           AD   D  ++ ++  I +       FS ++F S  E  + +D   F+ + Y      TDA
Sbjct: 94  ADENVDANVLKDSASIRHVSLPDAKFSMVSFSSNGEFVIAYDFVSFELSVY-----ETDA 148

Query: 466 LNDSDMKSVYGEELFNKLHTLPDPLMKNL 552
           L  +   S+Y     + +  LP+P + NL
Sbjct: 149 LLKNSATSIYKAVFPDLVQVLPNPEINNL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,469,320
Number of Sequences: 5004
Number of extensions: 75166
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)