Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J24
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1046 - 8246740-8247504 33 0.39
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 31 1.6
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 30 2.1
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 30 2.8
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977... 29 3.7
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 3.7
04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738 29 6.4
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 28 8.5
08_01_0985 - 9960064-9960249,9960327-9960419,9960518-9960578,996... 28 8.5
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 28 8.5
>01_01_1046 - 8246740-8247504
Length = 254
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 261 CCVAFCGKCCRYPHRPSPDIRKY 329
C VAFC CCRY HR + R Y
Sbjct: 44 CGVAFCSHCCRYHHRHAAVSRWY 66
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 486 LHIAIIQGIRVVFSVGITILFEILR 412
LH AI+ GIRV++ V +T+ F+I +
Sbjct: 171 LHSAILSGIRVLYPVKVTLWFDIFK 195
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 493 YGEELFNKLHTLPDPLMKNLG----DTLAMNMTEGEKVKSQENKIGGESTLSGITGFXSG 660
+G + F K HT P+ L +G D E Q K+ E S + G +
Sbjct: 130 WGTDYFIKAHTKPNELWAEVGDGDTDHYCWQRPEDMTTSRQAYKVDRERPGSDVAGETAA 189
Query: 661 MMSTLAGVMFRRSN 702
M+ A ++FR+SN
Sbjct: 190 AMAA-ASIVFRKSN 202
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 180 LTRNNTNKYVKTLNCVPNKDLFNLNSDCCVAF 275
+ RNNTN +TLN NK L+ +S+C + F
Sbjct: 952 VARNNTNDQYQTLNDPVNK-LYTTHSECSIEF 982
>06_02_0136 +
12195422-12195435,12196047-12196122,12196896-12197707,
12197941-12198010,12199469-12199557,12199633-12199666
Length = 364
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 219 NCVPNKDLFNLNSDCCVAFCGKCCRYPHRP 308
NC ++ ++ D C CGK C +P+RP
Sbjct: 156 NCPYGEECPQMHGDLCTT-CGKMCLHPYRP 184
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 222 CVPNKDLFNLNSDCCVAFCGKCC 290
C+PN L N S C V FCG CC
Sbjct: 39 CLPNCGLRNSRSFCKV-FCGSCC 60
>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
Length = 707
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 6 ISXTDLTIGNSLRFCRVDFFFSFKMAEL*RRVIHLFVTMEPLSDFNFETNKSTSNKDFLT 185
I +TI + FC+V F S + + + + S+F F T+ TS +F
Sbjct: 165 IGCCQITIPRGMEFCKVSFGESMNTSGIYEHTPCSYAAIMDYSNFTFSTSNLTSLLEF-- 222
Query: 186 RNNT 197
NNT
Sbjct: 223 -NNT 225
>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 544 KNLGDTLAMNMTEGEKVKSQENKIGGESTLSGITGFXSGM 663
+++ ++++ + EGE ++ N + GE LSGIT +G+
Sbjct: 1100 RDMQTSVSIKVFEGESASTKNNYLLGEFVLSGITPAPAGV 1139
>08_01_0985 -
9960064-9960249,9960327-9960419,9960518-9960578,
9960667-9960774,9960921-9961106,9961427-9962421,
9962626-9962988,9963085-9963333,9963419-9963574
Length = 798
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 26 YREFLKILSRRFFFFFQNGRTIKTCNTFICH 118
Y+EFL IL ++ F+ G +T +CH
Sbjct: 678 YKEFLTILHAYQYYKFKGGEQTRTREKLLCH 708
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 486 LHIAIIQGIRVVFSVGITILFEILRIV 406
LH AI+ G+RVV V T F+I + V
Sbjct: 173 LHSAILSGLRVVCHVNFTFCFDIYKNV 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,747
Number of Sequences: 37544
Number of extensions: 418649
Number of successful extensions: 930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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