Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J24
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55374-2|AAB36865.2| 375|Caenorhabditis elegans Hypothetical pr... 31 1.4
U55374-1|AAP82639.1| 392|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF024503-12|AAG24092.2| 329|Caenorhabditis elegans Serpentine r... 29 4.3
Z82085-4|CAB04986.1| 249|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z82085-8|CAB04990.1| 270|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z82085-1|CAB04984.1| 245|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z83102-11|CAB05470.1| 310|Caenorhabditis elegans Hypothetical p... 28 10.0
Z81492-11|CAB04035.1| 310|Caenorhabditis elegans Hypothetical p... 28 10.0
>U55374-2|AAB36865.2| 375|Caenorhabditis elegans Hypothetical
protein T02C5.1a protein.
Length = 375
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 520 HTLPDPLMKNLGDTLAMNMTEGEKVKSQENKIGGE 624
H LPDP + GD + + GE+ K+ EN+IG E
Sbjct: 143 HQLPDPTYEE-GDDSSSSEEIGEEEKTDENEIGSE 176
>U55374-1|AAP82639.1| 392|Caenorhabditis elegans Hypothetical
protein T02C5.1b protein.
Length = 392
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 520 HTLPDPLMKNLGDTLAMNMTEGEKVKSQENKIGGE 624
H LPDP + GD + + GE+ K+ EN+IG E
Sbjct: 160 HQLPDPTYEE-GDDSSSSEEIGEEEKTDENEIGSE 193
>Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical
protein M162.3 protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 569 MANVSPRFFINGSGSVCNLLNNSSPYTLFISLSFRASVWYFPLV*QFCLKYCGSCLTRIS 390
+A V+P +I G +C N++SP +++SL+ + +V + L + + IS
Sbjct: 261 LAIVTPAEWILAFGQICWTCNHASPAIIYVSLNSTIRREFLKIVFRNTLAPV-NLIFGIS 319
Query: 389 RLKKFIFEKF 360
LK +F K+
Sbjct: 320 ELKSLVFRKW 329
>AF024503-12|AAG24092.2| 329|Caenorhabditis elegans Serpentine
receptor, class u protein25 protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 450 FSVGITILFEIL--RIVSDAHFTAQKIHFREISFTLHTIHY*SIFLYQAKVCEGICNTF 280
F++ + ++++++ ++ AH +QK H EIS TL TI +L + IC F
Sbjct: 219 FTINLILIWKLIHYKLTLSAHAKSQKPHKAEISLTLTTISMTCSYLTNGMIT--ICGLF 275
>Z82085-4|CAB04986.1| 249|Caenorhabditis elegans Hypothetical
protein ZK218.5 protein.
Length = 249
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 237 DLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 353
DL + C CG CC P P+++ F ++CAT
Sbjct: 95 DLVKTAAASCPKTCGYCCESPDYKCPNVQ--FPRLNCAT 131
>Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical
protein F54C9.2 protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 358 RNFSKMN--FLSREMRVRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNK-LHTL 528
RNF K N FLS + R FK N + GK + DS K+VY EE+ + + L
Sbjct: 108 RNFEKNNKDFLSDQKRYP-----FKINLDSEGKAFFEIPLDSGTKNVYPEEIGSLIIGYL 162
Query: 529 PDPLMKNLGDTL 564
K+LG TL
Sbjct: 163 KSAAAKHLGVTL 174
>Z82085-8|CAB04990.1| 270|Caenorhabditis elegans Hypothetical
protein ZK218.11 protein.
Length = 270
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 231 NKDLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 353
N DL N C CG CC+ P++R F ++C T
Sbjct: 108 NPDLVNAAVSTCPKTCGFCCQSSDYNCPNVR--FPRLNCDT 146
>Z82085-1|CAB04984.1| 245|Caenorhabditis elegans Hypothetical
protein ZK218.1 protein.
Length = 245
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 237 DLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 353
DL C CG CC+ P P+++ F ++CAT
Sbjct: 95 DLVRAAVSTCPKTCGYCCQSPDYNCPNVQ--FPRLNCAT 131
>Z83102-11|CAB05470.1| 310|Caenorhabditis elegans Hypothetical
protein E03H4.13 protein.
Length = 310
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 99 VIHLFVTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNLN 254
+I F M D F +KSTSN++ L N+ K+ ++ L NLN
Sbjct: 173 LIRYFKFMNTWIDSAFVYSKSTSNEELLDGNDICKFAYQIDTSIGLSLKNLN 224
>Z81492-11|CAB04035.1| 310|Caenorhabditis elegans Hypothetical
protein E03H4.13 protein.
Length = 310
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 99 VIHLFVTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNLN 254
+I F M D F +KSTSN++ L N+ K+ ++ L NLN
Sbjct: 173 LIRYFKFMNTWIDSAFVYSKSTSNEELLDGNDICKFAYQIDTSIGLSLKNLN 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,176,708
Number of Sequences: 27780
Number of extensions: 418713
Number of successful extensions: 1167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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