Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J23
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    34   0.033
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.70 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 736  AXPPXRGXP-PPPXXXKTPXXPPXKXPPXP--PPXXPPP 843
            A PP    P PPP     P  PP   PP P  PP  PPP
Sbjct: 1697 AAPPQMSAPTPPPPPMSVP--PPPSAPPMPAGPPSAPPP 1733



 Score = 32.3 bits (70), Expect = 0.100
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 742  PPXRGXPPPPXXXKTPXXPPXKXPPXPPPXXPP 840
            PP    PPPP     P  PP   PP  P    P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 742  PPXRGXPPPPXXXKTPXXPPXKXPPXPPPXXPP 840
            PP R     P     P  PP      PPP  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 760  PPPPXXXKTPXXPPXKXPPXPPPXXPPP 843
            PPP      P  PP   P  PP   PPP
Sbjct: 1709 PPPMSVPPPPSAPP--MPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 766 PPXXXKTPXXPPXKXPPXPPPXXPPP 843
           PP     P  PP   PP  PP  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 742 PPXRGXPPPPXXXKTPXXPPXKXPPXPPP 828
           PP    PPPP        PP + PP PPP
Sbjct: 5   PPGNPPPPPPPPG---FEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +1

Query: 745  PXRGXPPPPXXXKTPXXPPXKX--PPXPPPXXPPP 843
            P  G PP P   + P  P      PP PPP   PP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
 Frame = +1

Query: 742  PPXRGXP-PPPXXXKTPXXPPXKXPPXPPP 828
            PP    P P P     P  PP   PP P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/55 (29%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
 Frame = +1

Query: 745  PXRGXPPPPXXXKTPXXPPXKX--PPXPPPXXPPPXXKXKXLXXFXXXGXGGXPP 903
            P    PP P     P  P      PP P P   PP  K             G PP
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
 Frame = +1

Query: 745  PXRGXPPPPXXXK--TPXXPPXKXPPXPPPXXPPP 843
            P  G PP P       P  PP + PP P P    P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 742 PPXRGXPPPPXXXKTPXXPPXKXPPXPPPXXPPP 843
           PP     P P     P  PP      PPP  PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +1

Query: 745 PXRGXPPPPXXXKTPXXPPXKXPPXPPPXXPPP 843
           P  G PPPP     P       PP PPP  PPP
Sbjct: 756 PIMGGPPPPPP---PPGVAGAGPPPPPP--PPP 783



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
 Frame = +1

Query: 736 AXPPXRGXPPPPX--XXKTPXXPPXKXPPXPPPXXPPP 843
           A  P    PP P       P  PP      PPP  PPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 851 FXXGGGXXGGGXGGFFXGGXXGVFXXXGG-GGXP 753
           F  G G  GGG GG F GG  G     GG GG P
Sbjct: 233 FEGGPGGFGGGPGG-FGGGLGGFGGGPGGFGGGP 265



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 21/51 (41%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 902 GGXPPXPXXXKXXRXFXFXXGGGXXGGGXGGFFXGGXXGVFXXXGG-GGXP 753
           GG PP P        F    G G   GG GG F GG  G     GG GG P
Sbjct: 198 GGPPPGPGGFGGFGGFG---GEGHHHGGHGG-FGGGPGGFEGGPGGFGGGP 244


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
 Frame = +1

Query: 742 PPXRGXPPPPXXXKTPXXPPXKXPPXP------PPXXPPP 843
           PP     PPP     P   P   P  P      PP  PPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
 Frame = +1

Query: 736 AXPPXRGXPPPPXXXKTP--XXPPXKXPPXPPPXXPPP 843
           A PP    PP P     P    PP    P P P   PP
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
 Frame = +1

Query: 742 PPXRGXPPPPXXXKTPXXPPXKXPPXPP--PXXPPP 843
           PP      PP   K P  P    PP  P  P   PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -1

Query: 842 GGGXXGGGXGGFFXGGXXGVFXXXGGGGXPLXGG 741
           GGG  GGG GG   GG        GG G    GG
Sbjct: 135 GGGGMGGGMGGM--GGMDDDMDMDGGFGTRTRGG 166


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
 Frame = +1

Query: 751 RGXPPPPXXXKTPXXPP---XKXPPXPPPXXPPPXXKXKXLXXFXXXGXGGXPPXXXR 915
           R  PPPP   +    PP          PP  PPP             G    PP   R
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = +1

Query: 745 PXRGXP--PPPXXXKTPXXPPXKXPPXPPPXXPP 840
           P R  P  PP         PP   PP  PP  PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 760 PPPPXXXKTPXXPPXKXPPXPPPXXP 837
           PP P     P   P   PP  PP  P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +1

Query: 742 PPXRGXPPPPXXXK-TPXXPPXKXPPXPP 825
           PP R  P  P   + T   PP   PP PP
Sbjct: 52  PPTRRLPRKPLPFRSTSLQPPSSQPPAPP 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,000
Number of Sequences: 5004
Number of extensions: 19328
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)