Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J22
         (969 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   8e-10
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 55.2 bits (127), Expect = 8e-10
 Identities = 24/66 (36%), Positives = 44/66 (66%)
 Frame = +1

Query: 220 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 399
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 400 SILQQI 417
            I+  +
Sbjct: 253 PIINTL 258


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 365 SQELEKLLLSLYRFYNKSIQAXVNV 439
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 99  IRHVSTAVAELEKXKSLRNSXISRDLXLEY 10
           IR  + +  +LEK K+L  +  SRD+  +Y
Sbjct: 386 IRWCTWSEGDLEKCKALTRAAYSRDVRPKY 415


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 99  IRHVSTAVAELEKXKSLRNSXISRDLXLEY 10
           IR  + +  +LEK K+L  +  SRD+  +Y
Sbjct: 386 IRWCTWSEGDLEKCKALTRAAYSRDVRPKY 415


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 99  IRHVSTAVAELEKXKSLRNSXISRDLXLEY 10
           IR  + +  +LEK K+L  +  SRD+  +Y
Sbjct: 386 IRWCTWSEGDLEKCKALTRAAYSRDVRPKY 415


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +3

Query: 249 PQRRIVERHIRLWF*KTFC----NPATRNNAL 332
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,329
Number of Sequences: 438
Number of extensions: 4113
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)