Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J20
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 496 SHGPGFLSSMLSSIRTFLL 440
           +HG G +S++LSSI   LL
Sbjct: 6   THGGGMVSAILSSIVLLLL 24


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 498 IHMDRAFYHRCCHPFVLS 445
           +++ RAF   C HP V S
Sbjct: 28  MYLVRAFCRNCIHPTVFS 45


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 498 IHMDRAFYHRCCHPFVLS 445
           +++ RAF   C HP V S
Sbjct: 476 MYLVRAFCRNCIHPTVFS 493


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +1

Query: 439 TVGKYEWMTASMIESPVHVNLLGAMRV-ISAFXPEIRKTA----IETTSKPKPRIINVGS 603
           ++ K    TA M + P +  +     V +SA    +R  A      +   P P I N+ +
Sbjct: 366 SIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSN 425

Query: 604 HCGLQPLP 627
             G+ PLP
Sbjct: 426 MSGMPPLP 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,661
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)