Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J19
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    33   0.041
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    30   0.50 
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    30   0.50 
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    29   0.88 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   1.2  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.0  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   2.0  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.7  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   8.2  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   8.2  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   8.2  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 15/48 (31%), Positives = 33/48 (68%)
 Frame = +3

Query: 273 AKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGE 416
           +++ E DS + E E++  +E+++ E+S+E E+   +  ESE+++E+ E
Sbjct: 78  SEDSESDSESSEEEEETESEEDS-EVSDESESESESESESEEESESEE 124


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
 Frame = +3

Query: 201 VEQLADVDALKPQINGDAH---IHEQTAKEKELDSG-TPEN--EKDAT-TEKEAIEISNE 359
           V+   +VD+L+PQ N D      H   A E  +D   T  N  E D T  + E I ++N+
Sbjct: 320 VDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNND 379

Query: 360 KEAGPVTNGESEQK 401
            E G   N ESE +
Sbjct: 380 DENG---NNESENE 390


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +2

Query: 446 ETKERKSEKEVVAQVYQLQQER*AQTRKEAKGRGD*DKW*TGKGSRRGD*STAEQSQNET 625
           + +E + E + + + +  + E   +  +E  G GD +    G+G   G  S  E+ +   
Sbjct: 175 DEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEID 234

Query: 626 VEEVKTPSE-ANEDKTPETPVTEPITN 703
           +EE +  S  AN     E P  +P T+
Sbjct: 235 IEEEEEESALANASAAEEKPEEKPETS 261


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 264 EQTAKEKELDSGTPENEKDATTEKEAIEISNEKEA 368
           +QT KEK++DS + ENE   ++   + E S + ++
Sbjct: 108 QQTEKEKDVDSASAENESINSSSSSSKECSTQTQS 142


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +3

Query: 201 VEQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVT 380
           V+     DA +     DA   E+  KE   D G     +DA+ + E+ E  +    G   
Sbjct: 180 VDWAVSKDAFEATTLKDASSEEEN-KEFVSDEGHSIVTEDASADSESEEEVDGHSEGKEL 238

Query: 381 NGESEQKAENGESVTTTPD 437
            GESE++  N + V  + D
Sbjct: 239 AGESEEEGSNVDDVEDSGD 257


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 204 EQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 383
           EQ  DV+ L   ++      + T+KE   D        +   EKE +E  ++ E     N
Sbjct: 6   EQTDDVETLMASLDQLGMEADPTSKEFNNDDSKIGAPSEVQDEKELLEFLDQLENDEEKN 65

Query: 384 GES--EQKAENGESVTTTPDD 440
            ++  E+  E  ESV  T ++
Sbjct: 66  EKNPIEEANEENESVAATSNE 86


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
 Frame = +3

Query: 204 EQLADVDALKPQINGDAHIHEQ----TAKEKELDSGTPENEKDATTEKEAIEISNEKEAG 371
           E++ D +   P I  D    E      AK  E DS     E D+T +   +    EK + 
Sbjct: 162 EEVFDTEITNPVIPADEDDDEYQDLPAAKRHEGDS-IKSTEHDSTLDSGVVIDGREKSSS 220

Query: 372 PVTNGESEQKAENGESVTTTPD 437
            +   ESEQ AE   +  +  D
Sbjct: 221 ELHEEESEQAAEGDTAKNSGTD 242


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 240 INGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 383
           +N DA++ EQ+ K  E     PE E++    K A    NE     V++
Sbjct: 297 VNSDANVVEQSEKTTEDADEEPETEENLDEFKPADGADNEDSKSLVSH 344


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 560 W*TGKGSRRGD*STAEQSQNETVEEVKTPSEANEDKTPE 676
           W TG+G    + + AE + N+ V E +   EA  D+  E
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDE 435


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 TAKEKELDSGTPENEKDATTEKEAIEISNEK-EAGPVTNGESEQKAENGESVTTT 431
           + KEKE D  + EN  +      A    N+K  AG   +   E    +G+S  +T
Sbjct: 205 SGKEKENDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDSTKST 259


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  LRLLISVIPLLFSIGLKNLSRAWVLNKAKES 128
           + LL  ++P +F  GLK+L   + + K+ ES
Sbjct: 558 ISLLAFILPHVFDYGLKSLDVIFTMKKSPES 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,756
Number of Sequences: 5004
Number of extensions: 37302
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)