Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J16
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    86   5e-18
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    30   0.49 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    29   1.1  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   4.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   7.9  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
 Frame = +1

Query: 259 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNH---------LMSEQEWRSIGVQQSQGWVH 411
           I+YS +Y D+E+EYRHV+LPK M+K +P ++         ++ E+EWR +G+ QS GW  
Sbjct: 25  IHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEM 84

Query: 412 YMTHQPEPHILLFRRRITTPPEKN*YEMRF 501
           Y  H PEPHILLF+R      EK+ Y+M+F
Sbjct: 85  YEVHVPEPHILLFKR------EKD-YQMKF 107


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 259 IYYSQK-YYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGW 405
           IY SQ+ ++D          P++M  +VP ++ ++E+ W+ I +Q  QGW
Sbjct: 70  IYPSQQMFFDAMKRKNWNPHPEDMKTIVPIHNAVNERAWQDI-LQWEQGW 118


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 345 FWH*LYHLFW*YYMSVFMFFVIIFLGIINVSRHDVTQQISTLKIFPSCGFLNL 187
           +W  L    W     VF+FF+ IF G+      +    +ST+K+   CGF+ L
Sbjct: 189 YWTNLNSGIWVTVFIVFLFFINIF-GVKGYGEMEFI--MSTIKVVAMCGFIIL 238


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 140 KGCDLNRIASNLRGRIKLRKPQLGNIFXVEICCVTSCRETFIIPKNIMTKNMNTD 304
           K C  +   S+L  R+ +  PQ GN+   +     S    F   +N+  K M T+
Sbjct: 10  KSCFKSSQTSHLAARVAMENPQKGNVINAQSSRQPSSENEF--RENLFFKEMRTN 62


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 64  SLSSLFRIAPKFLSCCFVKC--VLCIVE 141
           S+SSLF       S CFVKC  +LC+ +
Sbjct: 320 SVSSLFTSKTLLASFCFVKCQKLLCLAK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,551
Number of Sequences: 5004
Number of extensions: 71354
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)